Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATCCTGTACCAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcagtttgtttcccaatcttgatttggaaatgctcaacagggatagtggctacacactgtttttggtttttagaatagcacacataacaaagtc...

Basic information

species Zea mays
transcript GRMZM2G156218_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156218_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g21630.1 (Oryza sativa), 5'ss of exon 3
GAAAATCCTGTACCAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcagtttgtttcccaatcttgatttggaaatgctcaacagggatagtggctacacactgtttttggtttttagaatagcacacataacaaagtc-
 |||    |||| ||||||||||| |||||||| |||||||| || ||||| |||||  |||| |||||| | || |||||  | || ||||| ||||| ||  ||||  | ||||    || | |||||| || ||| | |||       ||  ||   |     |  ||| |    | ||     |   |  | |    
TAAAGGGTTGTATCAAACTGGCAAAGCATATGTGCATGATTCTTTTGACATCTATGGTAGACCTGTGCTAGTAGTGGTGGCGTCAAAGCATTTCCCTTCTgtaagttctttatgttgtt-aaccatgatttagacatgttgaacttttgatgtttcttagcctaaatagtgggtacaggcattctcaaagcattagaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420465|gb|DR805107.1|DR805107
EST:     TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG                         ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: gi|71759265|gb|DR957202.1|DR957202
EST:     TTTATGGCCGACCAGTGCTAATTGTAGTAGCAGCCAAACATTTTCCTTCG                         ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: gi|71445380|gb|DR826430.1|DR826430
EST:     TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG                         ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: gi|148937334|gb|EC881515.2|EC881515
EST:     TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG                         ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: gi|71438317|gb|DR819367.1|DR819367
EST:     TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG                         ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: gi|71445381|gb|DR826431.1|DR826431
EST:     TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG                         ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG