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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgataggagagtggaggtggtggatcatgtgtaagctttagactactgactgattcacttgtctatccggcgcgctggttcctttccctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCCACGGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGTTCCTAA

Basic information

species Zea mays
transcript GRMZM2G156218_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156218_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g21630.1 (Oryza sativa), 3'ss of exon 1
-aaatgataggagagtggaggtggtggat-catgtgtaagctttagactactgactgattcacttgtctatccggcgcgctggttcctttccctg---tgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCCACGGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGTTCCTAA
        |       | | ||  ||||| | |   || | |  ||||    ||  |  | |||||  |    |      | | | || ||| ||   ||||||||| ||| | ||||| ||||||||||| |  |||||||| || |||||||| |||||||||||||||||||| ||||| || ||| ||||||||||| | |
gtgccagcaaccccccgtatgttctggatgcgtagataggatagagac-gtagatcg--tgacttgcttgcttg---tatttgcttctatccatgtgctgtgaagCTCGTCTTGGAGGTCAAAGAACGGCTGGAGAGGGAGCATCCGGGCCTCCCGACGGGCAGGAACGGGAGGGATGATGAGGAGATGATCCTCTGGTTCTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420465|gb|DR805107.1|DR805107
EST:     GCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|211323100|gb|FL366933.1|FL366933
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAAGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|71445380|gb|DR826430.1|DR826430
EST:     GCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|148937334|gb|EC881515.2|EC881515
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|211253175|gb|FL345473.1|FL345473
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAAGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|71438317|gb|DR819367.1|DR819367
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|71445381|gb|DR826431.1|DR826431
EST:     GCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactgactgattcacttgtctatccggcgcgctggttcctttccctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCCACGGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGTTCCTAA
                                ctggttcctttccct  CT-rich tract