1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcttggccagccgacctgtaacttatggatatgtcttagtattcaacatgcatttgttcttcataataatgatgatccatgtataatatgctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGGCAGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTG
species | Zea mays |
transcript | GRMZM2G156218_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|71759265|gb|DR957202.1|DR957202
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: TTTATGGCCGACCAGTGCTAATTGTAGTAGCAGCCAAACATTTTCCTTCG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|71445380|gb|DR826430.1|DR826430
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|148937334|gb|EC881515.2|EC881515
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|71438317|gb|DR819367.1|DR819367
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|71445381|gb|DR826431.1|DR826431
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: TTTATGGCCGACCAGTGCTAATTGTAGTGGCAGCCAAACATTTTCCTTCGgtgcgttcag ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
aacatgcatttgttcttcataataatgatgatccatgtataatatgctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGGCAGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTG
ttcttcataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcttggccagccgacctgtaacttatggatatgtcttagtattcaacatgcatttgttcttcataataatgatgatccatgtataatatgctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGGCAGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG