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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTGATCTGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttggtagcttcaaggcatgactaagcatctttgattaccttttttcggtggtagacatgcatatttttatttgtgacgatatgaatgaaacatt...

Basic information

species Zea mays
transcript GRMZM2G156218_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156218_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g21630.1 (Oryza sativa), 5'ss of exon 4
AGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTGATCTGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttggtagcttcaaggcatga----ctaagcatctttgattaccttttttcggtggtagacatgcatatttttatttgtgacgatatgaatgaaacatt
| | | |||||||||    ||| |||||||||||||||| || |||||||| ||||| |||| ||| ||||||||||||||||||||  | ||||||||||| ||||  ||   ||||    |||     |  | |  | | | |  || |     | |  ||  || |||| ||   |||  |  | |  | | || |     
ATTGAGTAGACTTCCCTTGGGAACAGAGAATATACTTGGCATTTTTGATCTTCGAGGATTTCAGGTGGAAAATGGTGATCTCCAGTTTTTGAAGTTTTTGgtaagttgtgttcattcattctatgctattcccaactacgtagttgtccctcagaagctactaaccaagcat-ttcagattaattgctaagtcattggagg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420465|gb|DR805107.1|DR805107
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: gi|71759265|gb|DR957202.1|DR957202
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: gi|74234555|gb|DT642469.1|DT642469
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: gi|71445380|gb|DR826430.1|DR826430
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: gi|148937334|gb|EC881515.2|EC881515
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: gi|71438317|gb|DR819367.1|DR819367
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: gi|71445381|gb|DR826431.1|DR826431
EST:     TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG                         ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT