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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaagacagataggtctaaaatttttcatgtcagctctggtatggtaaccgagttcatataagcacctctaatcttcagttttcctttcaactgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAATCCTGTACCAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTT

Basic information

species Zea mays
transcript GRMZM2G156218_T02
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420465|gb|DR805107.1|DR805107
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: gi|211323100|gb|FL366933.1|FL366933
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTCATGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: gi|71445380|gb|DR826430.1|DR826430
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: gi|148937334|gb|EC881515.2|EC881515
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: gi|211253175|gb|FL345473.1|FL345473
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTCATGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: gi|71438317|gb|DR819367.1|DR819367
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: gi|71445381|gb|DR826431.1|DR826431
EST:     ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC                         AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaccgagttcatataagcacctctaatcttcagttttcctttcaactgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAATCCTGTACCAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTT
                                    ttcctttca  putative branch site 
                                  ttttcctttcaact  CT-rich tract
        ttcatataa  TA-rich tract