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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCTCCCTCGTCCGGGCTCCTCCGCTCAAGTCGAGGAGTGCAGTGCGCTGTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccacagctactacctgtgtgcttcgtaagacctatctatgcctgcacccaccagcacagggatatgtaccggcctgctcgtttcagctggaaca...

Basic information

species Zea mays
transcript GRMZM2G156218_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420465|gb|DR805107.1|DR805107
EST:     GCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|211323100|gb|FL366933.1|FL366933
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAAGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|71445380|gb|DR826430.1|DR826430
EST:     GCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|148937334|gb|EC881515.2|EC881515
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|211253175|gb|FL345473.1|FL345473
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAAGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|71438317|gb|DR819367.1|DR819367
EST:     GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
EST: gi|71445381|gb|DR826431.1|DR826431
EST:     GCGGTGCCACCTCCACCTCCAAG                         CTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC
genomic: GCGGTGCCACCTCCACCTCCAAGgtaaacccac ... ctgtgtgaagCTTGTCCTAGAGGTGAAAGAACGGCTAGCAAGGGAGCACCCAGGCCTCCCC