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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAGTGAAGAGAACAGTAGAGTCGTACTCCCATCTACAAGCTCAGAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaactgccttcatcccttgtgcccacacataccctgtatattcatagtacttttgtacttcatttgaaatccttaccaatttatctattcatatgcag

Basic information

species Zea mays
transcript GRMZM2G149224_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149224_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g29170.1 (Oryza sativa), 5'ss of exon 8
GATGGAGTGAAGAGAACAGTAGAGTCGTACTCCCATCTACAAGCTCAGAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaactgccttcatcccttgtgcccacacataccctgtatattcatagtacttttgtacttcatttgaaatccttaccaatttatctattcatatgcag
|||||| | ||||||||| ||||||| ||  ||||||| ||||| || ||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||         ||| ||    | ||||   |   || ||   |||    | ||   ||     |||| ||  | |  ||| |   | ||    |||||
GATGGACTTAAGAGAACAATAGAGTCATATCCCCATCTGCAAGCACAAAATCAAAGGAGCATATCAAAAGCCTCAATTTTCCTTGGCAATGGAAATCgtatgaa--------tatctctcacacacacatgca---tgcatgcccatg---ccttcacacccttcttgagattataatgaatattgatcttggc-tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87151705|gb|DY396494.1|DY396494
EST:     GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC                         TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: gi|32863056|gb|CF002738.1|CF002738
EST:     GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC                         TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: gi|166483903|gb|EG135197.1|EG135197
EST:     GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC                         TTGCAAAAACNGTACTTTGGGAAGA
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGA
EST: gi|22489855|gb|BU049778.1|BU049778
EST:     GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC                         TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: gi|60337162|gb|DN204135.1|DN204135
EST:     TTCCTCGGGAATGGAAATC                         TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
genomic: TTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC