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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGCGACGAAGAAGAGGGTTTCCTGGGTGCTGCTCTCCGCGAAGGCCAGGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtctcccatttgccccccttcccatgttgttagccaggttggaatcataaggcgacgcggcggtgccctttcgtttcgtgtgtgtgtgggggg...

Basic information

species Zea mays
transcript GRMZM2G149224_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211074088|gb|FL056288.1|FL056288
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211071353|gb|FL056276.1|FL056276
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211074089|gb|FL056289.1|FL056289
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|149072461|gb|EE160738.2|EE160738
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211071352|gb|FL056275.1|FL056275
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211071351|gb|FL056274.1|FL056274
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATA
EST: gi|211071355|gb|FL056278.1|FL056278
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211074087|gb|FL056287.1|FL056287
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211074092|gb|FL056292.1|FL056292
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211074086|gb|FL056286.1|FL056286
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211071358|gb|FL056281.1|FL056281
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211074085|gb|FL056285.1|FL056285
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211074083|gb|FL056283.1|FL056283
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: gi|211071356|gb|FL056279.1|FL056279
EST:     GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG                         CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA