1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatgaaaatctgtcattcttcacttagacccgtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAGCATTGATAGTATGGTGGGCGACGCCTGTACCATTCTTCTGCACTTTGG
species | Zea mays |
transcript | GRMZM2G149224_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|60337056|gb|DN204029.1|DN204029
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|211446981|gb|FL117889.1|FL117889
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: TCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
genomic: TCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
atataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAGCATTGATAGTATGGTGGGCGACGCCTGTACCATTCTTCTGCACTTTGG
gactgat putative branch site (score: 3)
ttcttgtc putative PPT
aaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaaaatctgtcattcttcacttagacccgtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAGCATTGATAGTATGGTGGGCGACGCCTGTACCATTCTTCTGCACTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG