1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTACTATGATTTCACCTACGTGGAAAATGTGGCATATGGCCATGTTTGTGCGGAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAAgtatggatttcacttacatataaactgtggggtaactttggatcttttggtcagcatcttacattcgagattcactaatcctatttgatattgcttttccag
species | Zea mays |
transcript | GRMZM2G149224_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAA ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCAEST: gi|18450805|gb|BM429083.1|BM429083
genomic: GAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAAgtatggattt ... gcttttccagACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCA
EST: GAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAA ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCAEST: gi|149072461|gb|EE160738.2|EE160738
genomic: GAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAAgtatggattt ... gcttttccagACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCA
EST: CGGAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAA ACCTATTCCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCAEST: gi|22489855|gb|BU049778.1|BU049778
genomic: CGGAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAAgtatggattt ... gcttttccagACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCA
EST: AAGATAGCCGCTGGAAAA ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCAEST: gi|31364547|gb|CD448902.1|CD448902
genomic: AAGATAGCCGCTGGAAAAgtatggattt ... gcttttccagACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCA
EST: CGGAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAA ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCA
genomic: CGGAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAAgtatggattt ... gcttttccagACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACTATGATTTCACCTACGTGGAAAATGTGGCATATGGCCATGTTTGTGCGGAGAAAACTCTATCATCTGAAGATGGTGCAAAGATAGCCGCTGGAAAAgtatggatttcacttacatataaactgtggggtaactttggatcttttggtcagcatcttacattcgagattcactaatcctatttgatattgcttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA