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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTTAAAACATCATTGTCCGTTTTTGCTAGGTTTCACTATCTCTGCTGGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaatctgtcattcttcacttagacccgtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacag

Basic information

species Zea mays
transcript GRMZM2G149224_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149224_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g29170.2 (Oryza sativa), 5'ss of exon 9
TTATGTTAAAACATCA-TTGTCCGTTTTTGCTAGGTTTCACTATCTCTGCTGGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatg--aaaatctgtcattcttcacttagaccc-gtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacag
 | |||  |  |   |  ||   ||| |||| ||||   | | || ||  ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||   |||  |  |  ||||    ||  | || |  | | ||| | ||||| ||||||||||||| ||  | |   |  ||   |  | ||
-TGTGTCCAGTCTCTAACTGCTTGTTCTTGCCAGGTGGTATTCTCCCTATTGGTTGTGAGCATCCTTAGTTCCATGTCTTCGCAATCTGCATTTAAAATAGgtaattttaaataccatgcttctctttttgaatcctgcaaaacaaggagcatgagcacatgactgatgatgaactat-ctgatggggagaatag

upper sequence: GRMZM2G149224_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g29170.1 (Oryza sativa), 5'ss of exon 11
TTATGTTAAAACATCATTGTCCGTTTTTGCTAGGTTTCACTATCTCTGCTGGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatg--aaaatctgtcattcttcacttaga-cccgtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacag
                                 ||   | | || ||  ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||   |||  |  |  ||||    ||  | || |  | | ||| | ||||| ||||||||||||| ||  | |   |  ||   |  | ||
---------------------------------GTGGTATTCTCCCTATTGGTTGTGAGCATCCTTAGTTCCATGTCTTCGCAATCTGCATTTAAAATAGgtaattttaaataccatgcttctctttttgaatcctgcaaaacaaggagcatgagcacatgactgatgatgaactat-ctgatggggagaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60339412|gb|DN206385.1|DN206385
EST:     GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG                         GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: gi|60337056|gb|DN204029.1|DN204029
EST:     GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG                         GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: gi|211446981|gb|FL117889.1|FL117889
EST:     TCTCAGGCTGCATTTAAAATAG                         GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
genomic: TCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA