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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactgctaacttgtgtgtagccagctttggttcctacttcataattaatgacaacacttagttttgtttatgagataacaccgaattgagccatgtttacttattgccattacgtatcactatatcactaacaattaacaagtaaaccttgtttactgcaatgatttgcatgtgacattgtgcag

Basic information

species Zea mays
transcript GRMZM2G149224_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g29170.2 (Oryza sativa), 5'ss of exon 2
CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactgctaacttgtgtgt-agccagctttggttcctacttcataattaatgacaacacttagttttgtttatgagataacaccgaattgagccatgtttacttattgccattacgtatcactatatcactaacaattaacaagtaaaccttgtttactgcaatgatttgcatgtgacattgtgcag
||||||| ||||| || || |||||||| |||||||| |||||||| || ||||||||||| ||||||||||||  ||| ||||| || |||||||||| ||||||||| ||  |  |||||||||||| || ||        || |    ||  | | |||||||||||||| |     ||  ||  || |||| ||                                                                                   
CTTTTGAGGGGGCTGATGTTGTTTTCCACATGGCTGCACCAGATTCGTCTATCAACAACTTTCACCTTCATTATTCAGTTAATGTTGAGGgttggtacttctaacttgtatgccatgcagctttggttcttaatt--------atcattgtacagattgttgtttatgagatatcg----atccagttatttttattttcaa-------------------------------------------------------------------------------

upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT1G47290.1 (Arabidopsis thaliana), 5'ss of exon 3
CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactgctaacttgtgtgtagccagctttggttcctacttcataattaatgacaacacttagttttgtttatgagataacaccgaattgagccatgtttacttattgccattacgtatcactatatcactaacaattaacaagtaaaccttgtttactgcaatgatttgcatgtgacattgtgcag
 |||| |||| |||||||| || || |||||||| |||||||||||||| || |||||   ||| ||||| ||   ||| |||||  | |||| | |     |||||   | | |  |  |||  |  ||  || | ||   |||| ||   ||||||||| || |    |     | || |      || |                                                                                        
GTTTTCAAGGAGCAGAAGTGGTGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGCTTCAGTACTCAGTTAATGTTCAAGgtttgaaga---aacttcaattttgtaaattttc-tctctgttttagaa---atgagaa--tttagttttgattgtt---ttgtttccaacttgtttgtggtag--------------------------------------------------------------------------------------

upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0008g02200.t01 (Vitis vinifera), 5'ss of exon 3
CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactgctaacttgtgtgtagccagctttggttcctacttcataattaatgacaacacttagttttgtttatgagataacaccgaattgagccatgtttacttattgccattacgtatcactatatcactaacaattaacaagtaaaccttgtttactgcaatgatttgcatgtgacattgtgcag
| |   |||| || || |  |||||||| ||||||||||||||||||||||| |||||   ||| || ||| ||  |||||||||  | |||    | ||||  ||  |  |     |  ||||     |  |    ||||  |  |  |  ||| ||| | | || | |||         ||    || || ||||  | |  |                                                                           
CATGCCAAGGAGCTGAGGCTGTTTTCCACATGGCTGCTCCAGATTCATCCATTAACAATCACCAGCTCCATCATTCAGTCAATGTGCAAGgtaaaaaatgctggctgctaag--attaaatttgacatgt-ttctgaaattgcttcc--cctttactttggctgatcaaatatttattttgtgttttattttaactttattctgtag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149072461|gb|EE160738.2|EE160738
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATGTTATTGACACTTGTATCCGTTGCAAGGTGAAGAGACTCA
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATGTTATTGACACTTGTATCCGTTGCAAGGTGAAGAGACTCA
EST: gi|211071352|gb|FL056275.1|FL056275
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATG
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATG
EST: gi|211071355|gb|FL056278.1|FL056278
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATGT
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATGT
EST: gi|211074087|gb|FL056287.1|FL056287
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATGTTATTGACACTTGTATCCGTTGCAAGGTG
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATGTTATTGACACTTGTATCCGTTGCAAGGTG
EST: gi|211074092|gb|FL056292.1|FL056292
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATGTTATTGACGCTTGTAT
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATGTTATTGACACTTGTAT
EST: gi|211074086|gb|FL056286.1|FL056286
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATGTTATTGACGCTTGTATCCGTTGGCA-GGTGAAGAGACTC
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATGTTATTGACACTTGTATCCGTTG-CAAGGTGAAGAGACTC
EST: gi|211071356|gb|FL056279.1|FL056279
EST:     AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG                         GAACAAAGAATGTTATTGACACTTGTATCCGTTGCAAGGTGAAGAGACTCA
genomic: AGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATGgttggtactg ... cattgtgcagGAACAAAGAATGTTATTGACACTTGTATCCGTTGCAAGGTGAAGAGACTCA