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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgtttcacaatgacatctgtagaataatgtaatacctagacttttgttatcactcaccagccaaatctatgacaaataactttccacataact...

Basic information

species Zea mays
transcript GRMZM2G149224_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g29170.2 (Oryza sativa), 5'ss of exon 6
ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgtttcacaatgacatctgtagaataatgtaatacctagacttttgttatcactcac-cagccaaatctatgacaaataactttccacataact------
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||| || |      |  | |    | |  |  |  | | | |||| || | || | |   ||       |   | |  ||     || | | ||||| |      
ACCTATTTCATAACAAATATGGAGGCTATAAAATTCTGGGAGTTCATGTCGTTGATTTTGGAAGGACTCGGATATGAAAGgtattgattt-----gaaaatacaaatggtcttctaca-tgcttagatttattttctgaggaacatcattgatagtgtctcagtatgctgtac-cataattaggccc

upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA06G06080.1 (Glycine max), 5'ss of exon 6
ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgta--ttcatgtttcacaatgacatctgtagaataatgtaatacctagacttttgttatcactcaccagccaaatctatgacaaataactttccacataact--
 | |||||||||||||||||||||||||| ||||||||||||||| |||||||| |  | |||||||||||||||||||||||  ||| | | |     | ||   |  |   |||   |    | | ||     | |        ||  ||||  | ||| |  |   |||  |  |||    
GCATATTTCATAACAAATATGGAGCCTATGAAATTCTGGGAGTTCGTGTCATTGGTAGTGGAAGGTCTTGGATATGAAAGgtaggttcttatctactgttaaccattagatgttaaccaagattcaaaacacccataagttt----catgcaaaaatttgaaagttttatttttaattaataat

upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G00480.1 (Glycine max), 5'ss of exon 6
ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgta--ttcatgtttcacaatgacatctgtagaataatgtaatacctagacttttgttatcactcaccagccaaatctatgacaaataactttccacataact-
 | |||||||||||||||||||| ||||| ||||| ||||||||| ||||| || |  | |||||||||||||||||| ||||  ||| |   |     | ||   |  | | ||||  |  |   | |        |  | |  |  || |||  | ||  |  |  ||||    || | | 
GCATATTTCATAACAAATATGGAACCTATGAAATTTTGGGAGTTCGTGTCAGTGGTAGTGGAAGGTCTTGGATATGAAGGgtaggttcttacgtactgttaaccattagatattaatcaaggattcaaaacacc--cacaaatttcgtgcaaaaaat-tgcaagttttctttttttattaatg

upper sequence: GRMZM2G149224_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G14860.1 (Glycine max), 5'ss of exon 6
ACCTATTTCATAACAAATATGGAGCCTATAAAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgta--ttcatgtttcacaatgacatctgtagaataatgtaatacctagacttttgttatcactcaccagccaaatctatgacaaataactttccacataact-
 | ||||||||||||||||||||| |||| ||||| ||||||||| ||||| || |  | ||||||||||| |||||| ||||  ||| |   |     | ||   |  | |  ||   |  |   | |       ||    |||     ||||  | ||| |  |  ||||    || | | 
GCATATTTCATAACAAATATGGAGTCTATGAAATTTTGGGAGTTCGTGTCAGTGGTAGTGGAAGGTCTTGGGTATGAAGGgtaggttcttacgtactgttaaccattagatatcaaccaaggattcaaaacacccataaatttcatg---caaaaatttgaaacttttctttttttattaata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87151705|gb|DY396494.1|DY396494
EST:     AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG                         GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGT
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: gi|32863056|gb|CF002738.1|CF002738
EST:     AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG                         GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGT
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: gi|18450805|gb|BM429083.1|BM429083
EST:     ATTCTGGGAGTTCATGTCATTGAATTTAAGAAAGGTCTTGGATATGAAAG                         GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGT
genomic: ATTCTGGGAGTTCATGTCATTG-ATTTTAG-AAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: gi|149072461|gb|EE160738.2|EE160738
EST:     AATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAAG                         GC-TTCAGTAAAAATACCCGTCTCCTGT-ATGATGC
genomic: AATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAA-Ggtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTC-TGTTATGATGC
EST: gi|22489855|gb|BU049778.1|BU049778
EST:     AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG                         GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGT
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: gi|31364547|gb|CD448902.1|CD448902
EST:     AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG                         GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGCGGCTCATGTTGT
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT