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gtatccttttgctttaattatctgattatttgtctttttcttatgatttctaccattcatcatagatgttagaattccttgactaccattctatttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAAATGCCGACAGAGCTGAATGTTTCAGGCAACAG
species | Zea mays |
transcript | GRMZM2G147335_T03 |
intron # | 6 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTC CCGTGCATCGGGTAGATCGTTTGGGTTCAGGCCTCCTTATATTTGCAAAAAEST: gi|89250665|gb|DY622451.1|DY622451
genomic: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTCgtatcctttt ... atttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAA
EST: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTC CGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAAEST: gi|71442909|gb|DR823959.1|DR823959
genomic: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTCgtatcctttt ... atttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAA
EST: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTC CGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAAEST: gi|78092632|gb|DV521006.1|DV521006
genomic: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTCgtatcctttt ... atttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAA
EST: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTC CGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAA
genomic: TACTGTAGTTGGGATTCTGCAGGCAGAGCATGGGTTAACACCCCTATTTCgtatcctttt ... atttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAA
ttctaccattcatcatagatgttagaattccttgactaccattctatttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAAATGCCGACAGAGCTGAATGTTTCAGGCAACAG
ttccttgac putative branch site
ttctattttt putative PPT
attctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttttgctttaattatctgattatttgtctttttcttatgatttctaccattcatcatagatgttagaattccttgactaccattctatttttgcagCGGTGCATCGGTTAGATCGTTTGGTTTCAGGCCTCCTTATATTTGCAAAAAATGCCGACAGAGCTGAATGTTTCAGGCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA