1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cgtgcatcttcctttttatttaaaccttgtgcttcagattttgagctcattcatagtaacatatgcattgctgcatgtaagtgaaaggtgaaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCACACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATA
species | Zea mays |
transcript | GRMZM2G147335_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCACEST: gi|89250665|gb|DY622451.1|DY622451
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
EST: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCACEST: gi|71442908|gb|DR823958.1|DR823958
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
EST: C-TCTGACCTCTTCATTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT GTTCATGCAGTGAAGTGTGGGAGGCTEST: gi|71442909|gb|DR823959.1|DR823959
genomic: CGT-TGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCT
EST: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCACEST: gi|78092632|gb|DV521006.1|DV521006
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
EST: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
ctcattcatagtaacatatgcattgctgcatgtaagtgaaaggtgaaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCACACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATA
tagtaac putative branch site (score: 1)
taacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgcatcttcctttttatttaaaccttgtgcttcagattttgagctcattcatagtaacatatgcattgctgcatgtaagtgaaaggtgaaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCACACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATA
-gtgcatc
- - - - - - - - - - - - - - - gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc