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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accctctgtgttctgacttaacaaaaataattcacatgtctttttctcatttacaaatttttagttcaagtctttttctaaaggtgtttttttcttccagGCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCA

Basic information

species Zea mays
transcript GRMZM2G147335_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94474917|gb|EB703875.1|EB703875
EST:     ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAG                         GCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
genomic: ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAGgtcagttgct ... tttcttccagGCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
EST: gi|89250665|gb|DY622451.1|DY622451
EST:     ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAG                         GCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
genomic: ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAGgtcagttgct ... tttcttccagGCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
EST: gi|71442909|gb|DR823959.1|DR823959
EST:     ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAG                         GCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
genomic: ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAGgtcagttgct ... tttcttccagGCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
EST: gi|78092632|gb|DV521006.1|DV521006
EST:     ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAG                         GCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT
genomic: ACAGACTATATTGTGAAATCATCACAAAAGATAAGCCACTTCTTGCATAGgtcagttgct ... tttcttccagGCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatttacaaatttttagttcaagtctttttctaaaggtgtttttttcttccagGCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCA
                              ttctaaa  putative branch site (score: 2)
                                       tgtttttttcttcc  putative PPT
     ttacaaatttttagtt  TA-rich tract