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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGAGCCACCTGTCTTGGCGGGTGATATTTCAATACTTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCAgtaggtttatatttataatgtaccggcacgagccacctgtcctgcctacttattgttattcttctaatcaagtgcatttgtcaatatgtcatatgtttgt...

Basic information

species Zea mays
transcript GRMZM2G147335_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94474917|gb|EB703875.1|EB703875
EST:     TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCA                         GTTCATCCATGTGGTCAATACCGGCA-GAATACTGTAGTTGGGATTCTGCA
genomic: TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCAgtaggtttat ... cattttgtagGTTCATCCATGTGGTCAATACCG-CAAGAATACTGTAGTTGGGATTCTGCA
EST: gi|89250665|gb|DY622451.1|DY622451
EST:     TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCA                         GTTCATCCATGTGGTCAATACCGCAAGAATACTGTAGTTGGGATTCTGCAG
genomic: TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCAgtaggtttat ... cattttgtagGTTCATCCATGTGGTCAATACCGCAAGAATACTGTAGTTGGGATTCTGCAG
EST: gi|71442909|gb|DR823959.1|DR823959
EST:     TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCA                         GTTCATCCATGTGGTCAATACCGCAAGAATACTGTAGTTGGGATTCTGCAG
genomic: TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCAgtaggtttat ... cattttgtagGTTCATCCATGTGGTCAATACCGCAAGAATACTGTAGTTGGGATTCTGCAG
EST: gi|78092632|gb|DV521006.1|DV521006
EST:     TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCA                         GTTCATCCATGTGGTCAATACCGCAAGAATACTGTAGTTGGGATTCTGCAG
genomic: TTAAGAATGAAGTTGATGTCGTAACTATTTGCAAACCAGCTTCTGTTCCAgtaggtttat ... cattttgtagGTTCATCCATGTGGTCAATACCGCAAGAATACTGTAGTTGGGATTCTGCAG