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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATTCGCCTGGTATGGCAGCACCGCCCGGGGGAGCGGGGATAGTGTGGCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACGgcaagtaaccgcaacctcctctcctcctcattgctgaaccagtgaaccgcgacgcacgcttgttcccagcaataaaaccctaaacccctcatgtgctgacgattggtgggttccccctgaag

Basic information

species Zea mays
transcript GRMZM2G147335_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94474917|gb|EB703875.1|EB703875
EST:     GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACG                         GTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
genomic: GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACGgcaagtaacc ... ccccctgaagGTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
EST: gi|89250665|gb|DY622451.1|DY622451
EST:     GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACG                         GTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
genomic: GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACGgcaagtaacc ... ccccctgaagGTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
EST: gi|71442908|gb|DR823958.1|DR823958
EST:     GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACG                         GTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
genomic: GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACGgcaagtaacc ... ccccctgaagGTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
EST: gi|71442909|gb|DR823959.1|DR823959
EST:     GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACG                         GTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
genomic: GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACGgcaagtaacc ... ccccctgaagGTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
EST: gi|78092632|gb|DV521006.1|DV521006
EST:     GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACG                         GTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT
genomic: GCAGACGCCGGCCAACCCGCCCGAGTCGCACGACTACATCATCCGCAACGgcaagtaacc ... ccccctgaagGTCGGCGCTACGTGAGGCCTTACTACTTCGAGTTCATCTCCCAT