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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGAACAGATGGGCTGGAAAGACCATCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgccattatttcctttgaatttcatgtaccatactgtttcttttcattacacgccattgtggttatatcattgtctgccaggaggtcctagttg...

Basic information

species Zea mays
transcript GRMZM2G147335_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94474917|gb|EB703875.1|EB703875
EST:     TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT                         GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
EST: gi|89250665|gb|DY622451.1|DY622451
EST:     TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT                         GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
EST: gi|71442908|gb|DR823958.1|DR823958
EST:     C-TCTGACCTCTTCATTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT                         GTTCATGCAGTGAAGTGTGGGAGGCT
genomic: CGT-TGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCT
EST: gi|71442909|gb|DR823959.1|DR823959
EST:     TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT                         GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
EST: gi|78092632|gb|DV521006.1|DV521006
EST:     TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTAT                         GTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC
genomic: TCGTTGACCTCTTCACTGATGAGTTCAAAGGGCGTTCCCGCGATTACTATgtatgatgcc ... aaattgctagGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTTGATGGGCAAATGGTTCAC