1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAATAGTGTTCCTCAAGGCACAGATCAAGTTGTTCTCGCAGGGAATATTTCCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaataaaaaaaatgcacatctgattcattctaatcacctgcataaataaaatttgcactaatatgtactcccaacgcattttgctcag
species | Zea mays |
transcript | GRMZM2G066578_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGTTGCTCGTGCTGTTCCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCAEST: gi|12058339|gb|BF729405.2|BF729405
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCAEST: gi|211441119|gb|FL034998.1|FL034998
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCTGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTATCATTTTCTTAAGCCTAACATGGCAEST: gi|8577333|gb|BE129970.1|BE129970
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCAEST: gi|78091932|gb|DV520306.1|DV520306
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCAEST: gi|7844522|gb|AW787744.1|AW787744
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCAEST: gi|211355369|gb|FL034995.1|FL034995
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCTGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTATCATTTTCTTAAGCCTAACATGGCAEST: gi|211355368|gb|FL034994.1|FL034994
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCTGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTATCATTTTCTTAAGCCTAACATGGCAEST: gi|211355370|gb|FL034996.1|FL034996
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCTGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTATCATTTTCTTAAGCCTAACATGGCAEST: gi|211441121|gb|FL035000.1|FL035000
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
EST: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCA-CAAGCAEST: gi|89757800|gb|DY687246.1|DY687246
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCA
EST: GTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTTCTTAAGCCTAACATGGCEST: gi|78179861|gb|DV550234.1|DV550234
genomic: GTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCA-TTTTCTTAAGCCTAACATGGC
EST: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAG GTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
genomic: CCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaata ... ttttgctcagGTAGTAATGACCAACAAGCAGGATTACCATTTTCTTAAGCCTAACATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATAGTGTTCCTCAAGGCACAGATCAAGTTGTTCTCGCAGGGAATATTTCCAAAGTTGCTCGTGCTGTTGCCGCAGCATTGTGTAGGAAGAATATCAAGgtaagaaataaaaaaaatgcacatctgattcattctaatcacctgcataaataaaatttgcactaatatgtactcccaacgcattttgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA