1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatctcgtatcgtgtgtcgctcttcacatctgatataatttgttaaccaacgcaagcagggttgactcaataattcatattttgtaaattaagttatttacatgattccatatgttgttctgacttctgagtatacaaataaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGTTCATGCCATTCTATGACTACATATATAACACCATGGACAAGTCATCGGACACG
species | Zea mays |
transcript | GRMZM2G066578_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTCTTCAAATGGTTCCCTCCCTCTCA-GTATCTCATGTACACACCCTC GTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGGTCATEST: gi|149101383|gb|EE187500.2|EE187500
genomic: GGCTCTTCAAATGGTTCCCTCC-TCTCAAGTATCTCATGTACACACCCTCgtaagtatct ... taaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGTTCAT
EST: GGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCCTC GTTTCATTCTCTTCCCCACACTCAGTTCAGGGACAA-CTACTCCCTGTEST: gi|148956804|gb|EC902698.2|EC902698
genomic: GGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCC-TCgtaagtatct ... taaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGG-ACAAACTACTCCCTGT
EST: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTC GTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTAEST: gi|76018388|gb|DT945558.1|DT945558
genomic: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTCgtaagtatct ... taaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTA
EST: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTC GTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGTTCATEST: gi|148999701|gb|EE036698.2|EE036698
genomic: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTCgtaagtatct ... taaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGTTCAT
EST: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTC GTTTCATTCTCTTTC-CCACACTCAGTTCAGGACAAACTACTCCCTGEST: gi|78091933|gb|DV520307.1|DV520307
genomic: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTCgtaagtatct ... taaactttagGTTTCATTCTCTT-CACCACACTCAGTTCAGGACAAACTACTCCCTG
EST: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTC GTTTCATTCTCTTCACCACCCTCAGTTCAGGACAAACTACTEST: gi|93015094|gb|EB640614.1|EB640614
genomic: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTCgtaagtatct ... taaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACT
EST: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTC GTTTCATTCTCTTCACCACACTCAGTTCAGGACAAA
genomic: TGGCTCTTCAAATGGTTCCCTCCTCTCAAGTATCTCATGTACACACCCTCgtaagtatct ... taaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAA
tatttacatgattccatatgttgttctgacttctgagtatacaaataaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGTTCATGCCATTCTATGACTACATATATAACACCATGGACAAGTCATCGGACACG
ttctgac putative branch site (score: 3684)
tatacaaataaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatctcgtatcgtgtgtcgctcttcacatctgatataatttgttaaccaacgcaagcagggttgactcaataattcatattttgtaaattaagttatttacatgattccatatgttgttctgacttctgagtatacaaataaactttagGTTTCATTCTCTTCACCACACTCAGTTCAGGACAAACTACTCCCTGTTCATGCCATTCTATGACTACATATATAACACCATGGACAAGTCATCGGACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA