1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcagtgtaatcaccatccacatgcaaggcaggtaatgagtatattagcaatagattgaaaaatggaaataataattaacaataatatatttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGTTGGGAGTAAGACTCGTAGATGGCACCAGCTTAGCTGCTGCAGTAGTTG
species | Zea mays |
transcript | GRMZM2G066578_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGACAAGGAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAG GCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGEST: gi|8577333|gb|BE129970.1|BE129970
genomic: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAGgtatgtcatt ... ttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAG
EST: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAG GCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGEST: gi|7844522|gb|AW787744.1|AW787744
genomic: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAGgtatgtcatt ... ttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAG
EST: TGTTACCCTCGGACTCCTTAACCAG GCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGEST: gi|211441121|gb|FL035000.1|FL035000
genomic: TGTTACCCTCGGACTCCTTAACCAGgtatgtcatt ... ttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAG
EST: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAG GCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGEST: gi|78179861|gb|DV550234.1|DV550234
genomic: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAGgtatgtcatt ... ttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAG
EST: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAG GCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAG
genomic: AAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCCTTAACCAGgtatgtcatt ... ttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAG
tagcaatagattgaaaaatggaaataataattaacaataatatatttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGTTGGGAGTAAGACTCGTAGATGGCACCAGCTTAGCTGCTGCAGTAGTTG
aattaac putative branch site (score: 2167)
attgaaaaatggaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtgtaatcaccatccacatgcaaggcaggtaatgagtatattagcaatagattgaaaaatggaaataataattaacaataatatatttgtcgacagGCACATAACCTCAACAGAAATGGAGAACTTTATCTTCAGAAGTGCCCAAAGTTGGGAGTAAGACTCGTAGATGGCACCAGCTTAGCTGCTGCAGTAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - -caccatc
- - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata