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gtaagaaccatagttaactaaatgtgcgatgtcttcttgatattttttcataacaatgagtaggacctccagtgccaacaaaatcatcttgttttagaaataatctaacagaatcacaaactttctttgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCAATATGTGAAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCC
species | Zea mays |
transcript | GRMZM2G066578_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATACAGTTTCCAT TATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCAEST: gi|8577333|gb|BE129970.1|BE129970
genomic: GATACAGTTTCCATgtaagaacca ... tgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCA
EST: ACAGTTTCCAT TATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCAEST: gi|211441121|gb|FL035000.1|FL035000
genomic: ACAGTTTCCATgtaagaacca ... tgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCA
EST: TGAAGAAACTCAAAATGCAATCATGGGTCATCCCAAGATACAGTTTCCAT TATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCAEST: gi|78179861|gb|DV550234.1|DV550234
genomic: TGAAGAAACTCAAAATGCAATCATGGGTCATCCCAAGATACAGTTTCCATgtaagaacca ... tgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCA
EST: ATGCAATCATGGGTCATCCCAAGATACAGTTTCCAT TATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCA
genomic: ATGCAATCATGGGTCATCCCAAGATACAGTTTCCATgtaagaacca ... tgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCA
atcatcttgttttagaaataatctaacagaatcacaaactttctttgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCAATATGTGAAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCC
atctaac putative branch site (score: 3743)
ctttctttgttctgt putative PPT
ttttagaaataatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaccatagttaactaaatgtgcgatgtcttcttgatattttttcataacaatgagtaggacctccagtgccaacaaaatcatcttgttttagaaataatctaacagaatcacaaactttctttgttctgtagTATGGATTGAGTTGGGAGAAGGAAGCAATCAATAGCCTCGTTGAGAAGGCAATATGTGAAGCTGACAAGAAAGGAGCTAAAGTTGTTACCCTCGGACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT