1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttccttccccaggagttctcagacaaccctcttatgcacatctatctgtgttcttttaaccccctttggagatcaaatgttactgtttttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAATCCCATTGATTGTGTGCACCTTGAACGGAACTGCTTCAATTATTGCATT
species | Zea mays |
transcript | GRMZM2G066578_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|76928666|gb|DV171728.1|DV171728
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|149101383|gb|EE187500.2|EE187500
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|211413211|gb|FL156318.1|FL156318
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CGCTACCACTCCCNAC-ACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAEST: gi|211418301|gb|FL156340.1|FL156340
genomic: CGCTACCACTCCC-ACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGA
EST: CGCTACCACTCCCACCCAC-ACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|148956804|gb|EC902698.2|EC902698
genomic: CGCTACCACTCCCACC-ACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|76018388|gb|DT945558.1|DT945558
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|148999701|gb|EE036698.2|EE036698
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|78091933|gb|DV520307.1|DV520307
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|93015094|gb|EB640614.1|EB640614
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|211520982|gb|FL156352.1|FL156352
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|211418299|gb|FL156338.1|FL156338
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|148930973|gb|EC873493.2|EC873493
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAAEST: gi|89757801|gb|DY687247.1|DY687247
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
EST: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCT CCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
genomic: CCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCAATCACCTgtaagcagaa ... ttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAA
atctgtgttcttttaaccccctttggagatcaaatgttactgtttttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAATCCCATTGATTGTGTGCACCTTGAACGGAACTGCTTCAATTATTGCATT
ttttaac putative branch site (score: 1466)
ctgttttttt putative PPT
ttcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttccttccccaggagttctcagacaaccctcttatgcacatctatctgtgttcttttaaccccctttggagatcaaatgttactgtttttttgtgcagCCGTCATCCATCCATTTGCTGAGCTCGTGGCGTATGAACTATTGTTCTCAATCCCATTGATTGTGTGCACCTTGAACGGAACTGCTTCAATTATTGCATT
- - - - - - - - - - - agacaac
- - - - - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact