Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAATCACAAGCAAGCAGTTGCGGGTGTAGCTCGCAACAATGGCGACGAACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccgcctcccggccccggggccccgtctcaataacctgcgtgcgtacgtccatggcacagagcgggggagaaggtgaaggaaaattagcaagtc...

Basic information

species Zea mays
transcript GRMZM2G066578_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066578_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g33250.2 (Oryza sativa), 5'ss of exon 1
AAAAATCACAAGCAAGCAGTTGCGGGTGTAGCTCG-CAACAATGGCGACGAACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccgcctcccggccccggggccccgtctcaataacctgcgtgcgt-acgtccatggcacagagcgggggagaaggtgaaggaaaattagcaagtc---
| |     |||| |||    |||     ||| ||| | || ||||| || ||||| || |||||||| |||||||| ||||||||||| |||| ||||||||||           ||  ||      |  | ||||  |||      | | | ||   | |    |||  ||   ||| |  | || | | |    | |||    
AGAGGCTGCAAG-AAGATTCTGCACCCATAGATCGTCTACCATGGCCACAAACCCAGGACTCTTCACGGAGTGGCCATGGAAGAAGCTTGGCAGCTTCAAGgtaatcaaaattaaccttccat----cttcttctccttaattcagttacttcactgtcttctggcagctcgatcgagcaaataaacgcacagcttctagttcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211413200|gb|FL156307.1|FL156307
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|78076046|gb|DV504480.1|DV504480
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418298|gb|FL156337.1|FL156337
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520986|gb|FL156356.1|FL156356
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|76928666|gb|DV171728.1|DV171728
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520985|gb|FL156355.1|FL156355
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211410661|gb|FL156303.1|FL156303
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520989|gb|FL156359.1|FL156359
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|149101383|gb|EE187500.2|EE187500
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413210|gb|FL156317.1|FL156317
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520990|gb|FL156360.1|FL156360
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413199|gb|FL156306.1|FL156306
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415753|gb|FL156325.1|FL156325
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413211|gb|FL156318.1|FL156318
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415750|gb|FL156322.1|FL156322
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418301|gb|FL156340.1|FL156340
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520981|gb|FL156351.1|FL156351
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415762|gb|FL156334.1|FL156334
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGCCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415748|gb|FL156320.1|FL156320
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|148956804|gb|EC902698.2|EC902698
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415749|gb|FL156321.1|FL156321
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415752|gb|FL156324.1|FL156324
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418305|gb|FL156344.1|FL156344
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|76018388|gb|DT945558.1|DT945558
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418310|gb|FL156349.1|FL156349
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|148999701|gb|EE036698.2|EE036698
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415760|gb|FL156332.1|FL156332
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520987|gb|FL156357.1|FL156357
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415755|gb|FL156327.1|FL156327
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520983|gb|FL156353.1|FL156353
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418302|gb|FL156341.1|FL156341
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211410656|gb|FL156298.1|FL156298
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|78091933|gb|DV520307.1|DV520307
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415757|gb|FL156329.1|FL156329
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520988|gb|FL156358.1|FL156358
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413202|gb|FL156309.1|FL156309
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|93015094|gb|EB640614.1|EB640614
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520982|gb|FL156352.1|FL156352
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418308|gb|FL156347.1|FL156347
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520980|gb|FL156350.1|FL156350
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418299|gb|FL156338.1|FL156338
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415751|gb|FL156323.1|FL156323
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418304|gb|FL156343.1|FL156343
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413208|gb|FL156315.1|FL156315
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211418296|gb|FL156335.1|FL156335
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520984|gb|FL156354.1|FL156354
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413204|gb|FL156311.1|FL156311
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413201|gb|FL156308.1|FL156308
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211415756|gb|FL156328.1|FL156328
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|148930973|gb|EC873493.2|EC873493
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413198|gb|FL156305.1|FL156305
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211520992|gb|FL156362.1|FL156362
EST:     ACCCCGGCCTCTTCAGCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413209|gb|FL156316.1|FL156316
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|211413205|gb|FL156312.1|FL156312
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCAAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
EST: gi|89757801|gb|DY687247.1|DY687247
EST:     ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAG                         TACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC
genomic: ACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 8 (downstream exon)
Score: 11

AAAAATCACAAGCAAGCAGTTGCGGGTGTAGCTCGCAACAATGGCGACGAACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACCAAGGGGTGGAGGGCGGCCGACCTGGGGTACGTGGCCATCCTCCCGTCGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 244

AAAAATCACAAGCAAGCAGTTGCGGGTGTAGCTCGCAACAATGGCGACGAACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccg ... atgcacgcagTACCTGCTGCTGGCGCCGTGGGTGGCGCACGGCGGCTACCTAGCGGCGACCAAGGGGTGGAGGGCGGCCGACCTGGGGTACGTGGCCATCCTCCCGTCGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAATCACAAGCAAGCAGTTGCGGGTGTAGCTCGCAACAATGGCGACGAACCCCGGCCTCTTCACCGAGTGGCCGTGGAAGAAGCTCGGCAACTTCAAGgtagctcccgcctcccggccccggggccccgtctcaataacctgcgtgcgtacgtccatggcacagagcgggggagaaggtgaaggaaaattagcaagtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaaa