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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatataacctttccaattagagaccactcgagaaaaaggtctagtgttgaactaacacttgtgatgctatatgatatctaatatatattgatttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG

Basic information

species Zea mays
transcript GRMZM2G053177_T02
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056995|gb|EB167413.1|EB167413
EST:     ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAG                         GTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
genomic: ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAGgtaaatataa ... atttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
EST: gi|31351841|gb|CD436198.1|CD436198
EST:     ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAG                         GTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
genomic: ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAGgtaaatataa ... atttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
EST: gi|76920088|gb|DV168002.1|DV168002
EST:     ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAG                         GTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
genomic: ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAGgtaaatataa ... atttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
EST: gi|31351842|gb|CD436199.1|CD436199
EST:     ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAG                         GTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
genomic: ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAGgtaaatataa ... atttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
EST: gi|71430904|gb|DR811954.1|DR811954
EST:     ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAG                         GTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
genomic: ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAGgtaaatataa ... atttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
EST: gi|31352973|gb|CD437330.1|CD437330
EST:     ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAG                         GTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG
genomic: ACAACCATATGTTATCAACAACGAACAACAGATTATGGAGGAACAACCAGgtaaatataa ... atttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaactaacacttgtgatgctatatgatatctaatatatattgatttctctagGTGTGGAGAACCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG
                                              tttctct  CT-rich tract
                      tatatgatatctaata  TA-rich tract