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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcatttggtctttgtgttatctcttgtctaccttagaacgtgtagagcattcatatgagcgtgcatatgttaaccttatcattaaaacatttttttcagATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGACCACAGCAATATTATTCTAGCATTACCAGCTATATATCCATTTCCACAAA

Basic information

species Zea mays
transcript GRMZM2G053177_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056995|gb|EB167413.1|EB167413
EST:     GGAGCGAGCCCGTTCCGTCGCCGTCACCCAGCGCGCCGATGGAGCAGCAG                         ATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGAC
genomic: GGAGCGAGCCCGTTCCGTCGCCGTCACCCAGCGCGCCGATGGAGCAGCAGgtaaaacgac ... tttttttcagATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGAC
EST: gi|76920088|gb|DV168002.1|DV168002
EST:     GGAGCGAGCCCGTTCCGTCGCCGTCACCCAGCGCGCCGATGGAGCAGCAG                         ATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGAC
genomic: GGAGCGAGCCCGTTCCGTCGCCGTCACCCAGCGCGCCGATGGAGCAGCAGgtaaaacgac ... tttttttcagATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGAC
EST: gi|71430904|gb|DR811954.1|DR811954
EST:     GGAGCGAGCCCGTTCCGTCGCCGTCACCCAGCGCGCCGATGGAGCAGCAG                         ATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGAC
genomic: GGAGCGAGCCCGTTCCGTCGCCGTCACCCAGCGCGCCGATGGAGCAGCAGgtaaaacgac ... tttttttcagATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcattcatatgagcgtgcatatgttaaccttatcattaaaacatttttttcagATGGTACCACTCTGTGTGAAGAGTGTGAAGCGAAAGAGGAAAAGGGTTGACCACAGCAATATTATTCTAGCATTACCAGCTATATATCCATTTCCACAAA
                       tgttaac  putative branch site (score: 2)
                                           catttttttc  putative PPT
                         ttaaccttatcattaa  TA-rich tract