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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaatataaaacgtacccatccatccagtttgagatctctgacgcacaaagtgcagtaaacaaacaattttttttctgtcacaaacttatgcaatgcag

Basic information

species Zea mays
transcript GRMZM2G053177_T02
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351841|gb|CD436198.1|CD436198
EST:     TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG                         GATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
genomic: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaata ... tgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
EST: gi|31351842|gb|CD436199.1|CD436199
EST:     TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG                         GATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
genomic: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaata ... tgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
EST: gi|31352973|gb|CD437330.1|CD437330
EST:     TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG                         GATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
genomic: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaata ... tgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG