1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacgcaatataaaacgtacccatccatccagtttgagatctctgacgcacaaagtgcagtaaacaaacaattttttttctgtcacaaacttatgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAGAGGACGACCCTGCAG
species | Zea mays |
transcript | GRMZM2G053177_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG GATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAGEST: gi|31351842|gb|CD436199.1|CD436199
genomic: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaata ... tgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
EST: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG GATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAGEST: gi|31352973|gb|CD437330.1|CD437330
genomic: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaata ... tgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
EST: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG GATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
genomic: TGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAGgtacgcaata ... tgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAG
cacaaagtgcagtaaacaaacaattttttttctgtcacaaacttatgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAGAGGACGACCCTGCAG
agtaaacaaacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcaatataaaacgtacccatccatccagtttgagatctctgacgcacaaagtgcagtaaacaaacaattttttttctgtcacaaacttatgcaatgcagGATTAGTGCACCAACAGAACCCTGAAAACGCCATAGAAAAAGTTGTTGCAGAGGACGACCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG