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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattttttttagttccatgaaattggctttagactattgattcaattcgctgtatatttgctatctgataagctaatataaatatatgttcttttttcccctagGAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG

Basic information

species Zea mays
transcript GRMZM2G053177_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351841|gb|CD436198.1|CD436198
EST:     TGAACTCATGGATCTCTCAAACATTGAAGACAATCTGGAGGATTCAACAG                         GAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACC
genomic: TGAACTCATGGATCTCTCAAACATTGAAGACAATCTGGAGGATTCAACAGgtaatatttt ... tttcccctagGAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACC
EST: gi|31351842|gb|CD436199.1|CD436199
EST:     TGAACTCATGGATCTCTCAAACATTGAAGACAATCTGGAGGATTCAACAG                         GAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACC
genomic: TGAACTCATGGATCTCTCAAACATTGAAGACAATCTGGAGGATTCAACAGgtaatatttt ... tttcccctagGAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACC
EST: gi|31352973|gb|CD437330.1|CD437330
EST:     TGAACTCATGGATCTCTCAAACATTGAAGACAATCTGGAGGATTCAACAG                         GAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACC
genomic: TGAACTCATGGATCTCTCAAACATTGAAGACAATCTGGAGGATTCAACAGgtaatatttt ... tttcccctagGAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtatatttgctatctgataagctaatataaatatatgttcttttttcccctagGAGTTCAGGATGAACAAACTATAATGAATAATCAACAACTGATTCCGGACCAACAAGCAG
                     agctaat  putative branch site (score: 3)
                                   tatgttcttttttccc  putative PPT
                  ataagctaatataaat  TA-rich tract