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gtaaatcaaaacacatccaattattagagacgctagcttcaaataatgcgttggagaactatgagctcccttatatatatgttgtattgtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTCTGCAG
species | Zea mays |
transcript | GRMZM2G053177_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAG GCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTEST: gi|31351841|gb|CD436198.1|CD436198
genomic: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAGgtaaatcaaa ... gtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
EST: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAG GCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTEST: gi|76920088|gb|DV168002.1|DV168002
genomic: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAGgtaaatcaaa ... gtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
EST: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAG GCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTEST: gi|31351842|gb|CD436199.1|CD436199
genomic: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAGgtaaatcaaa ... gtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
EST: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAG GCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTEST: gi|71430904|gb|DR811954.1|DR811954
genomic: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAGgtaaatcaaa ... gtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
EST: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAG GCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTEST: gi|31352973|gb|CD437330.1|CD437330
genomic: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAGgtaaatcaaa ... gtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
EST: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAG GCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
genomic: TGAACCAAAAATTGTTAGCAATGAACAATATATTTCCGATGAAGAAGCAGgtaaatcaaa ... gtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATT
taatgcgttggagaactatgagctcccttatatatatgttgtattgtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTCTGCAG
ttgtttct CT-rich tract
ttatatatatgttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcaaaacacatccaattattagagacgctagcttcaaataatgcgttggagaactatgagctcccttatatatatgttgtattgtttctgtagGCACAGTGCAGCTACCGAACCCTGCCAAACAAGACATTCTGGAAGCGGATTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG