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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatatgatataactcatccaattagagatccttcaaaaagtgcagttgagaaagtaaaatttctatgacataatatttctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAGAGGATCCTACAG

Basic information

species Zea mays
transcript GRMZM2G053177_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056995|gb|EB167413.1|EB167413
EST:     CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG                         GCATAATGCAAGAACAAAACATTGGAAATGCTTT
genomic: CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAGgtatatatat ... ctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTT
EST: gi|31351841|gb|CD436198.1|CD436198
EST:     CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG                         GCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
genomic: CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAGgtatatatat ... ctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
EST: gi|76920088|gb|DV168002.1|DV168002
EST:     CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG                         GCATAATGCTAGAACAAA-CATTGGAAATGCTTTAGAAGAAA-TGTGCCAG
genomic: CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAGgtatatatat ... ctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
EST: gi|31351842|gb|CD436199.1|CD436199
EST:     CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG                         GCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
genomic: CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAGgtatatatat ... ctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
EST: gi|71430904|gb|DR811954.1|DR811954
EST:     CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG                         GCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
genomic: CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAGgtatatatat ... ctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
EST: gi|31352973|gb|CD437330.1|CD437330
EST:     CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAG                         GCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG
genomic: CCAACAAAATGTTGCAGTTAATCAGCAACACAAACCAGACGAACAAGCAGgtatatatat ... ctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaagtgcagttgagaaagtaaaatttctatgacataatatttctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAGAGGATCCTACAG
                                        tatttct  CT-rich tract
                 aaagtaaaatttctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatatatgatataactcatccaattagagatccttcaaaaagtgcagttgagaaagtaaaatttctatgacataatatttctgtacgtagGCATAATGCAAGAACAAAACATTGGAAATGCTTTAGAAGAAAATGTGCCAGAGGATCCTACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT