1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGATGAAGAGCCAAACTATTCCAAGTTGATTTCATTGTTTGACAGTTTAATTGGACCAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAGgtttgtttcaggcatcagatatatcattggcgagttcaagtgaaacacacctttaaaatctagatacacctgggttatatatttagtggacatgctcaccctgcag
species | Zea mays |
transcript | GRMZM2G017835_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGGACCAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAG GTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAAEST: gi|67025680|gb|CO454429.1|CO454429
genomic: TTGGACCAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAGgtttgtttca ... caccctgcagGTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAA
EST: CAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAG GTAGGGCATAAGCGCGCCAGGTTGCTTAATGATGACGACGACCATGT--NNEST: gi|67011858|gb|CO440607.1|CO440607
genomic: CAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAGgtttgtttca ... caccctgcagGTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAA
EST: GACCAATCAATACTGATGGAGCCC-AAAG GTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAAEST: gi|211501408|gb|FL138834.1|FL138834
genomic: GACCAATCAATACTGATGGAGCCCAAAAGgtttgtttca ... caccctgcagGTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAA
EST: TTGGACCAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAG GTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAAEST: gi|14204221|gb|BG837898.1|BG837898
genomic: TTGGACCAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAGgtttgtttca ... caccctgcagGTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAA
EST: CCCTTCCAWTAGACCAATCAATACTGATGGASCCCAAAAG GTRGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAA
genomic: CCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAGgtttgtttca ... caccctgcagGTAGGGCAGAAGCGTGCCAGGTTGCTTAATGATGACGACGACCATGTAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAAGAGCCAAACTATTCCAAGTTGATTTCATTGTTTGACAGTTTAATTGGACCAATCCCTTCCATTAGACCAATCAATACTGATGGAGCCCAAAAGgtttgtttcaggcatcagatatatcattggcgagttcaagtgaaacacacctttaaaatctagatacacctgggttatatatttagtggacatgctcaccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA