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...tccataatgcttatgcagttttttaggttcatcaatgcaccgatattctttttgtgtatttcgtcaccgcaaaaggataattgacttctgcccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGAAATGAGGATGGTTTGTTGATAAGTTCAATATCATCATGCGCAAATCTT
species | Zea mays |
transcript | GRMZM2G017835_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|67011551|gb|CO440300.1|CO440300
genomic: TCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|6020754|gb|AW065562.1|AW065562
genomic: GCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: TCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|76285883|gb|DV025451.1|DV025451
genomic: TCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|38568968|gb|CF974853.1|CF974853
genomic: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|67025680|gb|CO454429.1|CO454429
genomic: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|67011858|gb|CO440607.1|CO440607
genomic: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|14204221|gb|BG837898.1|BG837898
genomic: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGEST: gi|31359524|gb|CD443881.1|CD443881
genomic: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
EST: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAG GTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
genomic: GCAACACAGTGGATTTCAGTATACAATTCAAGGCAACCTATGAAGCAGAGgttaatgtta ... cccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGG
ttctttttgtgtatttcgtcaccgcaaaaggataattgacttctgcccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGAAATGAGGATGGTTTGTTGATAAGTTCAATATCATCATGCGCAAATCTT
aattgac putative branch site (score: 3)
cttctgccctt CT-rich tract
ataattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccataatgcttatgcagttttttaggttcatcaatgcaccgatattctttttgtgtatttcgtcaccgcaaaaggataattgacttctgcccttgatagGTACCACTATAATGTGGCTGATGCAAGGTTAGCGCAACATGTGGAGAAAGGAAATGAGGATGGTTTGTTGATAAGTTCAATATCATCATGCGCAAATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG