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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAGCAACAGGATGGCCGATAGCGGCGGAATCAGCGCCGACAACGCCGCGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatcttaacccatctttgtttttatctactccatcagtccgcttttcattctctctaatccgatgattgctggctggattctcacccaaatcagatctccactgccttgccttccag

Basic information

species Zea mays
transcript GRMZM2G017835_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87157826|gb|DY402615.1|DY402615
EST:     CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|31355100|gb|CD439457.1|CD439457
EST:     CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|6587628|gb|AW244946.1|AW244946
EST:     CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|76285882|gb|DV025450.1|DV025450
EST:     TAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: TAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|148939514|gb|EC884102.2|EC884102
EST:     TAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: TAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|87156136|gb|DY400925.1|DY400925
EST:     CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|148988749|gb|EE031658.2|EE031658
EST:     TAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: TAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|22935602|gb|BU571877.1|BU571877
EST:     CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: CGGCCGCTAACGACGACGACGACACCAACACGGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
EST: gi|60345255|gb|DN212228.1|DN212228
EST:     CGCT-ACGACGACGACGACACCAACACGGGCGCCTTTCCCCGACACG                         GTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA
genomic: CGCTAACGACGACGACGACACCAACAC-GGCGCCTTTCCCCGACACGgtccgtatct ... tgccttccagGTCCAGGTCGGAGGATCTCCCGAGTACAAGGTCGAGAGGAAGCTTGGCAAA