Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacgatgctgaactccaaatagagataacgtcgtatatgtttctcattttctttattaagcatttggatggttagaaaaagatttaaaagccaa...

Basic information

species Zea mays
transcript GRMZM2G017835_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 12
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg-atgctgaactccaaatag--agataacgtcgtatatgtttctcattt-----tctttattaagcatttggatggttagaaaaagatttaaaagccaa
||||||||| |||| ||||||||||||||||||| ||||||| ||  | || | ||| |||| | | || ||||| || | |||||||||   ||| |||||||||     ||  | |  |  || | |  |  |  | ||   ||   ||     |      ||| |||     |  |       |         |||||||     
AAACAAGAAGTGGAGAGAAGGTTTTCATGTGACTTCAATGGCTACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCACGAAATGCTGGATTCAGTGATCAGgtttgctttatatttttagattgaattggttaattttcatcaggtaaaattagggctgaaagatctgtatctgataact---catctcatgttgagtttaaaa-----

upper sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 14
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaac-gatgctgaactccaaatagagataacgtcgtatatgtttctcattttctttattaagcatttggatggtt------agaaaaagatttaaaagccaa---------------------------------------------------------
||||||||| |||| ||||||||||||||| ||| ||||||| ||  | || | ||| |||| | | || ||||| || | |||||||||   | | |||||||||     |   || | ||||    || ||   ||   | | |||   || |   |||| |  ||  ||   ||  |      || |    ||  ||  |   |                                                         
AAACAAGAAGTGGAGAGAAGGTTTTCATGTCACTTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTAAACAGgtttgctgttaaaattgtattccattatgaaatttggtataaca-gttctgcaatgcttttagtgtgcgatttcttgtctctgttcagtatgtcatgcaatggtggaaaataagcctgttactatacttccttcatgctctcatcatttaccttttaactgtag

upper sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 14
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaac-gatgctgaactcca-------aatagagataacg------------tcgtatatgtttctcattt----tctttattaagcatttggatggttagaaaaagatttaaaagccaa------------------------------------------------------
||||||||| |||| ||||||||||||||| ||| ||||||| ||  | || | ||| |||| | | || ||||| || | |||||||||   | | |||||||||     |   || | | ||       | | |  |||||             |  ||| ||| | | ||||    ||| | || || || |       | |     | |||  |    |                                                       
AAACAAGAAGTGGAGAGAAGGTTTTCATGTCACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTAAACAGgtttgctgttaaaattgtatttcattatgacatttggtataacagttcttctgcatttctatttgtgtgtgatttcctgtctctgttcagtatgtcatacaatggtggccggtttggacataagcctgttaccagacagactggcttcatgctctcatcattaaccttttaactgtag

upper sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 14
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacgatgctgaactccaaatag--agataacgtcgtatatgtttctcattttctttattaagcatttggatggttagaaaaagatttaaaagccaa---
 |||||||| |||| ||||||||||||||||||  ||||||| ||  | || | ||| |||| | | || ||||| || | ||| |||||   ||| |||||||||    ||  | |  | ||| |    || |  | ||   ||   ||   |   |    | |  | ||||| ||   |   |    || |  |    ||   
-AACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCGCGAAATGCCGGATTCAGTGATCAGGtttgcttt-atatttagattcaattgattagttttcatcaggtaaaatt--aaggctggaaaatctgtatttg-ataactctcatctcatgttgagtttaaaat

upper sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 13
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttg----caacgatgctgaactccaaatagagataacgtcgtatatgtttctcattttctttattaagcatttggatggttagaaaaagatttaaaagccaa
|||||||||||||| |||||| || ||||| ||  ||||||||||| | || |||||||||| | | || |||||||||| | |||| |    ||| |||||| |    || ||||   ||        |   | |  | ||   | ||  |||  |    || |||    |||    || ||      | || |      || 
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttccttcagttttggatct-gtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31406153|gb|CD484885.1|CD484885
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|24770231|gb|CA405360.1|CA405360
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|6526679|gb|AW215970.1|AW215970
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|4776109|gb|AI665112.1|AI665112
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTTTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|60350700|gb|DN217673.1|DN217673
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|6020774|gb|AW065582.1|AW065582
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|67011551|gb|CO440300.1|CO440300
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|16918498|gb|BM073773.1|BM073773
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|4730791|gb|AI649957.1|AI649957
EST:     GC-ATCGATGGGC-ATAGTCATGTCCCGCAGTGCT-GATTTTNTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|32940878|gb|CF045697.1|CF045697
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGT
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGT
EST: gi|60342937|gb|DN209910.1|DN209910
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|213179378|gb|FM182943.1|FM182943
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|5871089|gb|AW017530.1|AW017530
EST:     GATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|5055914|gb|AI734801.1|AI734801
EST:     AGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: AGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|148939515|gb|EC884103.2|EC884103
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|6020754|gb|AW065562.1|AW065562
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|14243292|gb|BG841029.2|BG841029
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|18164930|gb|BM334769.1|BM334769
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTTTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|67025680|gb|CO454429.1|CO454429
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|211501406|gb|FL138832.1|FL138832
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|211223214|gb|FL476051.1|FL476051
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|24767009|gb|CA402154.1|CA402154
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|67025667|gb|CO454416.1|CO454416
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|76015691|gb|DT942861.1|DT942861
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTTTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|5361209|gb|AI795629.1|AI795629
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|5005985|gb|AI712047.1|AI712047
EST:     CGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: CGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|60347002|gb|DN213975.1|DN213975
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|67011858|gb|CO440607.1|CO440607
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|5686837|gb|AI939751.1|AI939751
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|113702247|gb|EE679751.1|EE679751
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|6695804|gb|AW288912.1|AW288912
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|14204221|gb|BG837898.1|BG837898
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|33101699|gb|CF061659.1|CF061659
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCT
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCT
EST: gi|67042443|gb|CO468698.1|CO468698
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|211123481|gb|FL438361.1|FL438361
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|6465583|gb|AW191178.1|AW191178
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
EST: gi|31359524|gb|CD443881.1|CD443881
EST:     GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAG                         GTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG
genomic: GCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacg ... attcttgcagGTTGTGGAGTTGGACTTCTTGTACCCGAGCGAGGGCATCCATAGACGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttgcaacgatgctgaactccaaatagagataacgtcgtatatgtttctcattttctttattaagcatttggatggttagaaaaagatttaaaagccaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG