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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCCATCGGAAATGGTGGCTTGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggagatctcaagcatgcttaatggctaatgttcaattcatcagtctccttttttatgtttctgtgatttgcttttcag

Basic information

species Zea mays
transcript GRMZM2G017835_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355100|gb|CD439457.1|CD439457
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|211242969|gb|FL282602.1|FL282602
EST:     TGCATTGCCATGGAGTCCATNTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|22819487|gb|BU499577.1|BU499577
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|211242967|gb|FL282600.1|FL282600
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|76015692|gb|DT942862.1|DT942862
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|32832258|gb|CD971936.1|CD971936
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|87156608|gb|DY401397.1|DY401397
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|31440950|gb|CD510381.1|CD510381
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|6587599|gb|AW244917.1|AW244917
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|6865178|gb|AW360528.1|AW360528
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|32832272|gb|CD971950.1|CD971950
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|211242968|gb|FL282601.1|FL282601
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|148939514|gb|EC884102.2|EC884102
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|26559748|gb|CA831983.1|CA831983
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|32832300|gb|CD971978.1|CD971978
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|148988749|gb|EE031658.2|EE031658
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|60345255|gb|DN212228.1|DN212228
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|32832043|gb|CD971721.1|CD971721
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|32835538|gb|CD975216.1|CD975216
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
EST: gi|32835900|gb|CD975578.1|CD975578
EST:     TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGG                         ATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC
genomic: TGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggag ... tgcttttcagATATGTGCATGGAGACGTCAAACCTGAGAACTTTCTTCTGGGGCAGCCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGCCATCGGAAATGGTGGCTTGCATTGCCATGGAGTCCATTTCCATCTTGGAAAGCATGCATTCTAAAGGgtaagcggagatctcaagcatgcttaatggctaatgttcaattcatcagtctccttttttatgtttctgtgatttgcttttcag

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