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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcggctcttcatcgtttgtgtctttcatcttccactatcaccaacagatagtactatgttattactagtgtccgtggttctaagtggctgcctctaatcatgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCAGGGTGACTACTATGTCATG

Basic information

species Zea mays
transcript GRMZM2G017835_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355100|gb|CD439457.1|CD439457
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|22819487|gb|BU499577.1|BU499577
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|76015692|gb|DT942862.1|DT942862
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|76285882|gb|DV025450.1|DV025450
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|32832258|gb|CD971936.1|CD971936
EST:     ACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: ACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|87156608|gb|DY401397.1|DY401397
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|6587599|gb|AW244917.1|AW244917
EST:     GCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: GCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|148939514|gb|EC884102.2|EC884102
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|148988749|gb|EE031658.2|EE031658
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|60345255|gb|DN212228.1|DN212228
EST:     AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: AGCAGCAAGGGCTGTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|32835538|gb|CD975216.1|CD975216
EST:     GTACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: GTACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
EST: gi|32835900|gb|CD975578.1|CD975578
EST:     ACCTACGGCCCTCCAGCTGAATGGCAAATCTACAC                         CGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA
genomic: ACCTACGGCCCTCCAGCTGAATGGCAAATCTACACgtaagcggct ... catgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgttattactagtgtccgtggttctaagtggctgcctctaatcatgtaccagCGCTCTTGGAGGCACACACGGCGTGCCCAAGGTGCATTATAAAGGTCGTCAGGGTGACTACTATGTCATG
                                      ctctaat  putative branch site (score: 3)
     ttattacta  TA-rich tract