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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAAGACATCAGTCGATTATGAACCTGTCTACAGTGATGCTCAAGCCAGgtatctataggctgtcctgggttttcatgacctttagctcatgttatgtatgcatctatgtgcatgttttcagttctaaagatatttgctttacagatca...

Basic information

species Zea mays
transcript GRMZM2G010044_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010044_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 5'ss of exon 9
GGTAAGACATCAGTCGATTATGAACCTGTCTACAGTGATGCTCAAGCCAGgtatctataggctgtcctgggttttcatgacctttagctcatgttatgtatgcatctatgtgcatgttttcagttctaaagatatttgctttacagatca------------
|| ||||||||||| || || || |||||||| ||||||||||| |||||||   ||| | || | |    || || |  ||||| |   ||    |  || | || || |||   |||||     || || | ||||   |||||| ||            
GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGgtgattattgcctatacc---ttctcttttccttttgactat----tcaatacttcgatatgcgcattttc-----tagagttttttgtaatacagagcacctttttgctgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91051661|gb|EB162079.1|EB162079
EST:     TAAGCCATCATTCGATTATGACCCTGTCTACAGTGATGCTCCAAGCCAG                         ATTTTTTAGCGACTACCGGTTTGATGTATCAAAACTGGAGCCAGTAGTTG
genomic: TAAGACATCAGTCGATTATGAACCTGTCTACAGTGATGCT-CAAGCCAGgtatctatag ... ttttctccagATTTTTTAGCGACTACCGGTTTGATGTATCAAAACTGGAGCCAGTAGTTG