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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTTGAGGAGGCTGGTTGTGACACACCAGCAAGTCCTAATTGTGGTGCTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatcttatgcaaatctggaaacatttatgtataagaggcattccgatgttgttactgaatagttatgactggaatcactaaacaaaaatgcaccc...

Basic information

species Zea mays
transcript GRMZM2G010044_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010044_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g03260.3 (Oryza sativa), 5'ss of exon 12
GATATTTGAGGAGGCTGGTTGTGACACACCAGCAAGTCCTAATTGTGGTGCTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatct-----tat----gcaaatctggaaacatttatgtataagaggcattccgatgttgttactgaatagttatgactggaatcactaaacaaaaatgcaccc
|||||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||  ||||||  ||     |||    | ||| | |||||  ||  |   || ||    |  | |  | ||     |  | ||||   ||   ||  | ||  | || |     
GATATTTGAGGAGGCTGGTTGTGATACACCAGCTAGCCCTAGTTGTGGTGCTTGTTTGGGTGGTCCTCGTGATACATATGCTCGCATGAATGAACCTATGgtaagtgcctccaaatatttcagtaaaacaggaaatgttgtttcgtatgaactttatcaacatagt-----agaatttatagatgtcttccttgaaagataaggt----

upper sequence: GRMZM2G010044_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA14G40570.1 (Glycine max), 5'ss of exon 14
GATATTTGAGGAGGCTGGTTGTGACACACCAGCAAGTCCTAATTGTGGTGCTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatcttatgcaaatctggaaacatttatgtataagag-gcattccgatgttgttactgaatagttatgactggaatcactaaacaaaaatgcaccc-
||||||||| || | ||| |||||||||||||| ||||||| ||||||||||||||||||||||||    ||||| || ||||| |||||||||||||  | ||||  |||        |   | |  ||    ||||  || | | | | |   |  ||||   || || |  |   | |   |  |   || ||||    
GATATTTGAAGAAGTTGGGTGTGACACACCAGCTAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCAAAAGATACTTACGCACGCATGAATGAACCTAAGgcaagttccttgcttctgccccaacatcttgtaatatactagtgtagttcaa--attctacttgttacttttatccttattatattgaaggaattgcaaata

upper sequence: GRMZM2G010044_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA17G37540.1 (Glycine max), 5'ss of exon 14
GATATTTGAGGAGGCTGGTTGTGACACACCAGCAAGTCCTAATTGTGGTGCTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatctta-tgcaaatctggaaacattta-tgtataagaggcattccgatgttgttactgaatagttatgactggaatcac-taaacaaaaatgcaccc
||||||||| || ||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||    ||||| || ||||| |||||||||||||  | ||||  |||  | |    |  | | | | || | ||  || |   |||  ||  |     | | |  ||||   |   || |  |  |   || ||||   
GATATTTGAAGAAGCTGGGTGTGACACACCAGCTAGTCCTAGTTGCGGTGCTTGTTTGGGTGGCCCGAAAGATACTTACGCACGCATGAATGAACCTAAGgcaagttccttgcttcggcccctgcatcttgtaatatactagtgtagttcaaattctacctgttactt-ttatccttattattatattgaaggaattgcaa--

upper sequence: GRMZM2G010044_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv05s0049g01980.t01 (Vitis vinifera), 5'ss of exon 14
GATATTTGAGGAGGCTGGTTGTGACACACCAGCAAGTCCTAATTGTGGTGCTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatcttatgcaaatctggaaacatttatgtataagaggcattccgatgttgttactgaatagttatgactggaatcactaaacaaaaatgcaccc---
|||||||||||| ||||||||||| ||||| ||||||||||  |||||||||||| ||||||| ||| | || ||||||||||| ||||||||||||   | ||| || || |     ||| |  |||  | |  | |  |     ||   | ||    ||  ||| || ||  |  | ||   | |  |||   |   |   
GATATTTGAGGAAGCTGGTTGTGATACACCTGCAAGTCCTACCTGTGGTGCTTGTATGGGTGGTCCTAGAGACACATATGCACGCATGAATGAACCTCAGgcaag-atattgttttcctcttggtacaactttaaaaagcatttcatcaactattccacct--atacttctgcttttattcctcagatgaaacccctaactta

upper sequence: GRMZM2G010044_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 14
GATATTTGAGGAGGCTGGTTGTGACACACCAGCAAGTCCTAATTGTGGTGCTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatcttatgcaaatctggaaacatttatgtataagaggcattccgatg-ttgttac-tgaatagttatgactggaatcactaaacaaaaat---gcaccc------
    |||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||   | |||| | |||| ||  |  | |||| |||      || |||||||        | || | ||   | || ||  |  | |||| | |  |||||     | ||      
----TTTGAGGAAGCTGGTTGTGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAGAGACACATATGCACGCATGAACGAACCTCAGGCAAgt-tattattcatcttggtaaaccttt------aaaaggcattttatcaactattccatgcccacttttgcttttattcaccagaagaaaatcatatagcctgtttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24769037|gb|CA404166.1|CA404166
EST:     CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACT                         GTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
genomic: CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
EST: gi|7162228|gb|AW519835.1|AW519835
EST:     CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACT                         GTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
genomic: CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
EST: gi|91051661|gb|EB162079.1|EB162079
EST:     CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACT                         GTTTGCGTGTCCACCCCGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
genomic: CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
EST: gi|7137997|gb|AW499377.1|AW499377
EST:     CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACT                         GTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
genomic: CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
EST: gi|86473276|gb|DY239646.1|DY239646
EST:     CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACT                         GTTTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG
genomic: CTTGTTTGGGTGGCCCTCGTGATACATATGCACGGATGAATGAACCTACTgtaagtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTTCCGGGCAGGATGGGCCACAAG