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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACCgtgtgtttctggctcaagattatcttaattaattgccacactgcataaccttgaacttagtccttttcgcatatttgctag

Basic information

species Zea mays
transcript GRMZM2G010044_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010044_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 5'ss of exon 7
ATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACCgtgtgtttctggctcaagattatcttaattaattgc---cacactgcataaccttgaacttagtccttttcgcatatttgctag
|||||||| |||||||| |||||||| || || |||||||| ||||||||||||||||||||||| ||||||||||  || || | |  |||||  | ||  || || ||||     ||   | |||  | || ||| || |  ||| |||| | ||| |||
ATTATTGGTGAGATTTCTGTATCTGGCGCAACATACAAATCCATGGAGTTTGTTGGATCAACTGTGGAAAGTCTAAATgtatgctccgtgctcataactagattgatcaattattttcatctttcatggcttttaacctaata-tttccgcaaacttggtag

upper sequence: GRMZM2G010044_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ16666 (Selaginella moellendorffii), 5'ss of exon 7
ATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACCgtgtgtttctggctcaagattatcttaattaattgccacactgcataaccttgaacttagtccttttcgcatatttgctag
|| |||||||||||  | || || ||||| || |||||||||||||||||||||||| || |||||||| || | || ||  || | |   ||    ||| || |   |  |    |||    | |  | ||  |  |  ||   ||||          
ATCATTGGAGAGATCACTGTTTCCGGTGCAACATACAAATCAATGGAGTTTGTTGGAACAGCTGTAGAACGTATGACGgtcagtatttttttcccc-ttacctcatcgagattgtccacc---tgatttcgagatcggaactca-cgcag---------