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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctacaaccgtttgcttcttgcttcattttttttagttcatgtcttggcttctctgcctggtatcagtaataccagaatttaggttcctagcttgtagcttcccccttccggagcattttacatttcggagttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGCCACTGCCGACCAGGCGAG

Basic information

species Zea mays
transcript GRMZM2G010044_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010044_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ16664 (Selaginella moellendorffii), 3'ss of exon 1
gtacgctacaaccgtttgcttcttgcttcattttttttagttcatgtcttggcttctctgcctggtatcagtaataccagaatttaggttcctagcttgtagcttcccccttccggagcattttacatttcggagttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGCCACTGCCGACCAGGCGAG
                                                                                    || |||    |  | |    | |    | |||    | | ||    |||| |||  ||||||| ||||| |||||||| || || |||||| | || |||||||||||||| |||||| | || ||||||
-----------------------------------------------------------------------------------gtacgtttgcggtgtttg---tacgtgattcggtcgctctaac---ccggatttga-tgcagGCAAATCCCGACTACAAGGGTGTTTGCCACGTTGCTCTTGCTCAGGAAGGTCACTGCAGTCCGGGCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772889|gb|DR970812.1|DR970812
EST:     AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
genomic: AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGGgtacgctaca ... ttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
EST: gi|211185238|gb|FL072192.1|FL072192
EST:     AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCGGACTACA
genomic: AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGGgtacgctaca ... ttgtctgcagGCTAATCCGGACTACA
EST: gi|76012112|gb|DT939282.1|DT939282
EST:     AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
genomic: AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGGgtacgctaca ... ttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
EST: gi|31355882|gb|CD440239.1|CD440239
EST:     AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
genomic: AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGGgtacgctaca ... ttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
EST: gi|31354069|gb|CD438426.1|CD438426
EST:     AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
genomic: AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGGgtacgctaca ... ttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC
EST: gi|211187638|gb|FL072207.1|FL072207
EST:     AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAAGC
genomic: AGCAGAACATCAAGTACTTCTATGACATCAAGGACCTCAGCGATTTCAGGgtacgctaca ... ttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagcttgtagcttcccccttccggagcattttacatttcggagttgtctgcagGCTAATCCGGACTACAAAGGCGTCTGCCACATCGCACTTGCTCAGGAAGGCCACTGCCGACCAGGCGAG
                             attttacattt  TA-rich tract