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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttataagctgtgctacatttgttcctttcttaggatctaccctgtaatcgggacttattattcttgttaattgctgcttacagATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACC

Basic information

species Zea mays
transcript GRMZM2G010044_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010044_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 3'ss of exon 6
gtaagcttataagctg-tgctacatttgttcctttcttaggatctaccctgtaatcgggacttatt-attcttgttaattgctgcttacagATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACC
|||||  || ||  |  |  || |||| |||  | ||||   |    || | | |    | |   | || ||   ||||||||  || ||||||||||| |||||||| |||||||| || || |||||||| ||||||||||||||||||||||| ||||||||||  
gtaagactacaaaatacttgtatattt-ttctgtacttatctttctaccagcattttctaatagctcatcctcaataattgctaattgcagATTATTGGTGAGATTTCTGTATCTGGCGCAACATACAAATCCATGGAGTTTGTTGGATCAACTGTGGAAAGTCTAAAT

upper sequence: GRMZM2G010044_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ16666 (Selaginella moellendorffii), 3'ss of exon 6
gtaagcttataagctgtgctacatttgttcctttcttaggatcta---ccctgtaatcgggacttattattcttgttaattgctgcttacagATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACC
                   |   |||     |||   | || ||    ||||||| | |       ||||   ||    |||  ||  |||||| |||||||||||  | || || ||||| || |||||||||||||||||||||||| || |||||||| || | || 
------------------gtgtgtttcgatttttagcaagagctggctccctgtacttgaagtac-ttat--atgcgcgttgaggcacacagATCATTGGAGAGATCACTGTTTCCGGTGCAACATACAAATCAATGGAGTTTGTTGGAACAGCTGTAGAACGTATGACG

upper sequence: GRMZM2G010044_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ32611 (Selaginella moellendorffii), 3'ss of exon 6
gtaagcttataagctgtgctacatttgttcctttcttaggatcta---ccctgtaatcgggacttattattcttgttaattgctgcttacagATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACC----------------------
                   |   ||||   ||||     || ||    ||||||| | |       ||||   ||    |||  ||  |||||| |||||||||||  | || || ||||| || |||||||||||||||||||||||  || |||||||| || | ||                       
------------------gtgtgtttggatctttagcgagagctggctccctgtacttgaagtac-ttat--atgcgcgttgaggcacacagATCATTGGAGAGATCACTGTTTCCGGTGCAACATACAAATCAATGGAGTTTGTTGGGACAGCTGTAGAACGTATGACGGTCAGTTCTTTTTCCCCTTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaggatctaccctgtaatcgggacttattattcttgttaattgctgcttacagATTATTGGAGAGATTTCAGTATCTGGTGCGACCTACAAATCAATGGAGTTTGTTGGATCAACTGTAGAAAGTCTAACC
                                    tgttaat  putative branch site (score: 3)
                          ttattattcttgttaa  TA-rich tract