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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaactagtcccttgaaatgctcataataaagttgggccaatgtgcttttctttcataacgttccaataactttgagatagagagtgttcttgtactaaaactaatttgcaaaaatgagcttctactatttagtttgtaggacaattctgacatcatcgctgttgtgttggtatactgcagGGTAAGACATCAGTCGATTATGAACCTGTCTACAGTGATGCTCAAGCCAG

Basic information

species Zea mays
transcript GRMZM2G010044_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010044_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 3'ss of exon 8
gtacaaaactagtcccttgaaatgctca-taataaagttgggccaatgtgcttttctttcataacgttccaataactttgagatagagagtgttcttgtactaaaactaatttgcaaaaatgagcttctactatttagtttgtaggacaattctgacatcatcgctgttgtgttggtatactgcagGGTAAGACATCAGTCGATTATGAACCTGTCTACAGTGATGCTCAAGCCAG
||||   | | | || || |||||||   ||||||| | | || |   |  | | |    | |||   |||| | | || || |         ||   ||  || |   |||| ||| ||  |  |||||   ||||  |  |  || |||| ||||  |||  | ||  |  ||||| ||||||||| ||||||||||| || || || |||||||| ||||||||||| |||||
gtactttaatgg-cctttaaaatgcttggtaataaaat-gagcgatatttttatgcaaataaaacaacccaacatccttaagct---------tcgaataagaagaaatatttacaagaacaaatttctaacttttacataat--gataattatgactccatatcggtcatcctggta-actgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttagtttgtaggacaattctgacatcatcgctgttgtgttggtatactgcagGGTAAGACATCAGTCGATTATGAACCTGTCTACAGTGATGCTCAAGCCAG
                   ttctgac  putative branch site (score: 2)