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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttatcattgtacacttatggacaaaaaatgcaattggatgctatgagcttctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 3'ss of exon 7
-cttttatcattgtacacttatggacaaaaaatgcaattggatgctatgagcttctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATA-CATGAAAGTTGACTGG--TTTTTGTTAATAATTGC
  |||  ||    |||  || |       |  |    | |  |||| |  | ||     |   | ||        |   |     |||   |||||  |||||||||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||| ||  | |   |     |  | |||  |    |   | | |   
gatttagtctggatactttttttcttcctattttacttcgattgctctttggttactccatttcacagacctaagtacctaaccatatcaactttgg-cagGGACATCACAACTACATTTCCAAGCTTTGTCTTCCATTCTCAAGTCGACGATACTTGAAATCTGAGAATTTCCCCCTCCAATGGAATGCCAGAAGACAGT---

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 3'ss of exon 8
cttttatcattgtacacttatggacaaa---aaatgcaattggatgctatgagcttctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC--
     |  |||      | ||  | |     || |  |     ||| | |   |   |          |  |         |  | ||    | | ||  ||||||||||||||| ||||| |||||||||||||| ||||| || || || |||||||||| ||    |  ||   |   |||           |  | |||  
-aaaaaagattaggtgttcataaaaatgttcaagtctataaaaatgttgtagacacttttgtttttcta--tagcacaagctaatcttgccacatgtgtgcagGGACATCACCACTACATTTCCAAGCTTTGTCTTCCATTCCCAGGTCGATGACACCTGAATTCTTGGATTTGTTTG--AACTCAAACCATCAGAAGAATGCTC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G173424_T02 (Zea mays), 3'ss of exon 8
cttttatcattgtacactt-atggacaaaaaatgcaat---tggatg-ctatgagcttctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC--
  | |   |    || | | ||   |    | | |||    | |||| ||||   ||| ||     |   | || |      ||||  ||  |   |||| |||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| || | ||||| |   ||      |  ||||   |      |||  |  |    
-ctgtgagaggcaacgcatgatatgctgtcagttcaaagtatagatgactattgtcttttcttgtgat--atctcaca--agtttgcattgctatatttggacagGGACATCACCACTACATTTCCAAGCTTTGTCTTTCACTCTCAGGTTGATGATAACTGAAATTG-ATGGGGTTACTTTGAAAAGAAAC-ATTAGAAGATATTC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G112672_T02 (Zea mays), 3'ss of exon 7
---------------------------------------------------------------------------------------cttttatcattgtacac----ttatggacaa-aaaatgcaattggatgctatgagctt--ctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC-
                                                                                        |  |||||    |||     ||||    ||  |  |   |||| |   | |     |   |||| | | |||| | ||| |   |  |  |  |  |||||  ||||||||||||||| ||||| || ||||||||||| |||||||| || || || ||||||| | |   | |  || |       |    ||  | |  |||| 
gtaagatattctaatcttttgcgtatgctgttaactctgtttagctggaaataacaaagacaacattaaataccacgatttatttagataatatcagaacacatgcgattatcctgaatgagctagtattgtaaattgtagttctacttcaaccaaatcaatttatggtt-ctaatcatgctaactttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGATACCTGAATTTCTGAAAACTAATGAATGTCAGAAGGTGG-ACTGCTTGCT

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G08230.1 (Glycine max), 3'ss of exon 9
cttttatcattgtacacttatggacaaaaaatgcaattggatgctatgagcttctcaaaccactcaactgatgttg------atttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAG-TCCCATACATGAAAGTTGACTGGTTTTTGTTA-ATAATTGC
    |    |  |||||||     |   || | | |     || | |    || ||     | |  |||| ||||       ||   ||||| |   ||||  ||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||| || ||||| |    |     |  | |   |  |||  | |  ||      
---gtcctttgatacacttgc---cgtgaactactaacatctgtttttcctttttcctgt-atttcactggtgttttctgatatcctttttaatgtgtttgggcaggGACATCACCACAACATTCCCGAGCTTTGTATTTCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCCATGGCTTCTTCCTTTGGGCTGCATGGCCA-

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 8
cttttatcattgtacacttatggacaaaaaatgcaattggatgctatgagcttctcaaaccactcaactgatgttg-atttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC-
|  | |    |||| |     | |||  | ||| | |   ||  | |   | | | |   | ||   ||  | |   ||   ||||| |   |  || ||||||||||||||| |||||||| |||||||| || ||||| ||||| ||||| || |||||     | |    | |    ||   ||| |     | | || 
cagtgagatgtgtagatcatagaacattatatgaactaacatctttttttcctgt-atttctctggtcttttctgatatcctttttaatgtgtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCTATGGCTTCTTCCTTTGGGCTGCA-TGGCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008619|gb|BQ793653.1|BQ793653
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|71871545|gb|DT020600.1|DT020600
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|30329256|gb|CD012518.1|CD012518
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCAACACCACATTTCCAAGCTTTGTCTTTCATTCTCAAGTTGACG
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACG
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     GTTCTACGACACCCATCCCCTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCCAGCTTTTGTCTTTCATTCTCAAGTTGACG
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTT-GTCTTTCATTCTCAAGTTGACG
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCA
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|33404954|gb|CF210581.1|CF210581
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATTACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCCAGCTT
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTT
EST: gi|22008469|gb|BQ793503.1|BQ793503
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATGACCAAGCTTTGTCTTTCATT
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATT
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     GTTCTACGACACCCATCCCTTTTGAAGGATATGACTCTTCAATACCTCAA                         GGACATTACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     TTCTACGACACCCATCCCTTTTGAAAGA-TATGACTCTTCAATACCTCAA                         GGACATTACCACC
genomic: TTCTACGACACCCATCCCTTTTGAA-GAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACC
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|34416243|gb|CF414997.1|CF414997
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTCCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCCAGTTGACG
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACG
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|34547727|gb|CF515959.1|CF515959
EST:     GTTTTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCT
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCT
EST: gi|33410135|gb|CF215762.1|CF215762
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|22008668|gb|BQ793702.1|BQ793702
EST:     GTTTTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|26260125|gb|CA811188.1|CA811188
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGGCTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|22008915|gb|BQ793949.1|BQ793949
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     GTTCTACGACACCTATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATTACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     GTTTTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     GTTCTACGACACCCATCCCTTTTGAAGGATATGACTCTTCAATACCTCAA                         GGACATTACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|27582659|gb|CB005354.1|CB005354
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAA                         GGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA
genomic: GTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAgtaagttgtg ... ctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagcttctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC
                                tttgttttatttcctt  CT-rich tract
                            ttgatttgttttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttttatcattgtacacttatggacaaaaaatgcaattggatgctatgagcttctcaaaccactcaactgatgttgatttgttttatttcctttgaacagGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGAAGTCCCATACATGAAAGTTGACTGGTTTTTGTTAATAATTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - cttatgg
- - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - cttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt