Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 3'ss of exon 7
------ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
         | |   || ||       | ||  |   ||| |||  || |||| | | ||  ||   |  |||  ||   |    ||||||     |||  |  |||| |||||||| || |||||||| ||||||||||  ||||| |||||||||||| | |  || ||||| || || || ||  |  ||||||| |||||||
atgacatatcctcaataggct-tggcataagatatggtcagttt--atcttgtttctttttaatt-gtaacttccaatgctaaactattttttcttatt--tgtagACATTTGAGGAGGCAGACACAAAGCATGATGGAAGAATTGATAAAGAAGAGTGGCGCAATCTGGTTCTTCGTCATCCCTCTTTGCTGAAGAACATGACTC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 3'ss of exon 6
ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
 |   |   |  | |     |  |     |||   |   |   |||| | | ||           |||||   || | ||  | | |  |||| | | |||| |||||||| || ||||||||||||||||| || ||||| |||||||| ||| | |  || |||||  |||| || ||  |  |||| || ||||| |
attgctacctttgtacattttacaaactgactagttgctgtgattgtttatattattctggctgtttatattattatgtttatattgcacattttacaagACATTTGAGGAGGCCGACACAAAACATGATGGGAAAATTGATAAAGAAGAATGGCGCAATCTAGTTCTCAGACATCCTTCTTTACTGAAAAACATGACAC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G112672_T02 (Zea mays), 3'ss of exon 6
-ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
 ||  ||  ||||  |   | |  |   ||    ||    ||     |  |      ||       ||  || ||| ||   ||||      || |   |||| |||||||| || |||||||| |||||||| || |||||||||||||| ||| | |   | ||  |  | || || ||  | |||||||| ||||| |
gcttattacttaaataaatactccaaacaagtgaaaacgtgacaagttggtcagcctatgtgctatttg-aatcttattaagttttttctttttctaaaagACTTTTGAGGAGGCAGACACAAAGCATGATGGGAAAATTGACAAAGAAGAATGGCGCAATTTAGTAGTGAGGCATCCCTCTTTATTGAAGAACATGACAC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 7
----------------------ctccttggttaag---cagcaagttgagggaaactcaat--ttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
                       | | |   ||||    |  |        ||  || ||   |   ||||| | ||| |   | |   |    |||   |     |    |  || |||  |  ||||||| |||||||| || ||||| |||||||| ||||||||||| ||||||||||||| ||||||| | || || || || ||||||||||| ||||| |
gttttaccccattttctataacttacatttctaagttctaatagtgcacatgagtcttaagagtctcattttctctttttgaaaactcacatggatagtttcaacattaaattttggatttctttagACCTTCGAGGAAGCAGATACAAAGCATGATGGCAAGATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G08230.1 (Glycine max), 3'ss of exon 8
-----------------------ctccttggttaagcagcaagt-tgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttgg----tgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC-
                        | | |   ||||    || | ||    | | ||      |  | | | | | ||      | |||  || |    |||  |  ||      || ||| |   ||||||| |||||||| || ||||| |||||||| || |||||||| ||||||||||||| ||||||| | || || || || ||||||||||| ||||| | 
ttttacccctattcttctatcacttacatttctaagttctaattgtgcacaagaatcttaagagtctctttttctctttttgaaaactcacatgaatagtttcgacattaaattttggatt-tcttagaCCTTCGAGGAAGCAGATACAAAGCATGATGGCAAAATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCT

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 3'ss of exon 8
ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
                      |   |  ||| | |||   |  | |      |  ||   |   ||  ||    |||      |  || || ||| ||||| ||||||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||  |||| ||   |||| ||||||| |||||||
----------------------gtaagttacttactttttttcctcttcaccctatattttttctttgaaagtaatttcccgagttttgaat-gtttcagACGTTTGAGGAAGCAGACACAAAACACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTTCTGAAGAACATGACTC

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 3'ss of exon 7
ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataaccttt-----------------ttttattttggtgcattgttcca--gACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
     |||||       |   ||   || |||  |||    ||      ||||     | |    | ||| |  ||                 |  | | |  ||   || || ||  ||| |||||||||||||| ||||||||||| || | ||| || || ||||||||||||| |||||||||  | || || |||||| | |||||||||||||
--gtgtggttccttcctaccctgctcgatactatattcttgttccactgttgtatagccaactcatgatagcagttgagaataaagtaaagagtggtttctaagtttcttctttcacagACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008619|gb|BQ793653.1|BQ793653
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|71871545|gb|DT020600.1|DT020600
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|30329256|gb|CD012518.1|CD012518
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|71877258|gb|DT026313.1|DT026313
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|33404954|gb|CF210581.1|CF210581
EST:     AGTCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTAACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACACAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|22008469|gb|BQ793503.1|BQ793503
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|161720497|gb|FC070609.1|FC070609
EST:     AGTCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|34416243|gb|CF414997.1|CF414997
EST:     AGTCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAGACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|34547727|gb|CF515959.1|CF515959
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGCCACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     AGTCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGATAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|33410135|gb|CF215762.1|CF215762
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|22008668|gb|BQ793702.1|BQ793702
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|349826323|gb|FQ416128.1|FQ416128
EST:     AATCTGGTATGAATCTTTCCGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|26260125|gb|CA811188.1|CA811188
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAANACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|22008915|gb|BQ793949.1|BQ793949
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|27582659|gb|CB005354.1|CB005354
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|351054502|gb|FQ451978.1|FQ451978
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAAAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|77587524|gb|DV222927.1|DV222927
EST:     AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     AGTCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAG                         ACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG
genomic: AATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGgtgctccctc ... attgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC
                    ttataac  putative branch site (score: 2)
                                              ttgttcc  putative PPT
                  tcttataacctttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctccttggttaagcagcaagttgagggaaactcaatttggattttgtatttgttgcatccatctcttataacctttttttattttggtgcattgttccagACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
-tccttgg
- - - - - - gcagcaa
- - - - - - - - - - - -agggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctc