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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 5'ss of exon 2
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
||||||| || ||  | |||||  | || |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||   | |   |  || |   ||  |  |   | | |   | |    | ||||  | |||                || || |||||||     ||   || ||  |    |      | || |  | ||   |||  || ||| |          
TTAGTGTGAGCGAGGTTGAGGCGTTGTATGAGCTGTTCAAGAAGATCAGCAGCGCGGTGATCGATGACGGACTGATCAACAAGgtcagtgggctaa-taatgcccatctgttcaactgaaaaaggatgtcgtttgttatgatg----------------atttcatgattctt----atgttatatg--gccctctgggggttgtgatcattttgggttggtatggtgcag--------

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 3
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggca-gtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
| || || || ||  ||||||| || |||||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||||||  |    |  |   | |||     |       |||| | | |  ||    |  |        | |  |||  ||  |   | ||| |     |  |  | ||   |  |   ||| |  ||     ||||   || | | |             
TCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCTTCAAGAAGATAAGCAGTGCTGTGATTGATGACGGGCTGATTAACAAGgttggtgtggagtcctctgttcgcgccacgattttgtatcgtagaattgggattgattgattggttgat-tgatgaaggcatgttattgtg----aacctgtatgcaatcact-gactgtgtttgtccgttgac-cttgtgcag-------------

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 2
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataa--gctattattcaatttataggcag-tattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
|||| || || ||  |||||||| | || || ||||| |||||||||||||| |||||||||||||| || |||||||||||||||  | | | |  |||  |  |   ||| |   |   | || | ||  ||| |  |    |    ||   ||| ||  |     |     |   |||| |   |  | ||      | ||   |  ||  | |  | |  |    |  |||  | |||
TTAGCGTGAGCGAGGTCGAGGCATTGTATGAACTGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggtgattgctgctgctttctttcttttcttctcttaggaaaatgaatacaactttcttgctt-tatgtatgtacacaatacacatacaccatacacatgatcgtgat--gagtaatctgggttgt-ggcgctcttgtcctggcatcctgcag

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G173424_T01 (Zea mays), 5'ss of exon 3
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctac--ggtaccatattacag
| || || |||||  ||||||| || |||||||||||||||| |||||||||||| || |||||||| || ||||| ||||||||    |       | |  |||| |   | |    |||  | |||||     || ||||     |   |||   || | |      || ||   | |    |||| || |       |  | |    || | ||||  | |  |  |||      |||
TCAGCGTGAGTGAGGTCGAGGCGCTGTACGAGCTGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAGgtcggcaatgggtgtctggttcactacttggttcttat--gtaatct---cttattaatctttgtggtatgtgcaagtgtggatggtc-ctgttagtatgcttgt-gtgtgatggtcaatgctga-gatggctgttcttgcttgtcacctctgcgcag

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 3
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctatta-ttcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
| || || || ||  ||||||| || ||||||||||| |||||||| ||||| ||||| || ||||| || ||||| ||||||||   | |||  |  |||  | || | | |||    |||   |  ||| |||||     ||    |   |||  |  || | | | |  |   | || ||   ||   | |   | || |  ||  |  |  |  | | | | |             
TCAGCGTGAGCGAGGTCGAGGCTCTGTACGAGCTGTTCAAGAAGATAAGCAGTGCTGTCATCGATGATGGGCTGATTAACAAGgtcagt-gatgggtgattggtccactgtttagttcttatgtaatctcttattgt-----tgtgtatggtatg--tgcatttgtgggtgatggtcaatgcc---tgagatatattagctgttcttgcttgtc-acctctttgcag-------------

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 3
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
| |||||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| || ||  |||| |||||||||  |           | ||   |   | |  |  ||||    |  |       || || |  |||| |   | |  || ||   ||  |   |    | |   | | ||   |                                         
TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgt----------ctgttttgtcattggaaaacattgtgttttgggc----atattgtatttcac-tagttgagcctttttcatcaatgaaaagaaaatacatatctcatta-----------------------------------------

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 4
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
|||| || |||||||| ||||| || || |||||||||||||| |||||||| |||||||||||||| || || || ||||||||    ||  | |  || |||  || | |     |      |  | |  |  |    |  ||   || ||   ||  ||| |||    ||          | || | || |   ||  |   | ||  || |                        
TTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAACAAGgtatgaaggaagggcatcattatatgtcttttatgccactcacttatactcctcacgaatcatg-catattgctacgtcttttggacatccttt------tctgattttccttgacc-tgtcttgtcgttcag-----------------------

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 4
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag
||||||| |||||||| || || || || ||||| |||||||| |||||||| || ||||||||||| || || || ||||||||  |    |||    || ||  || |     |    |||| ||      | |||| ||  | ||      || ||      | |||  |||   |    |||||                                                   
TTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGCAGTGCCGTGATTGATGATGGGCTAATAAACAAGgtataactctaac---ttgtttgatcttcttcctcatttggtaa---agctttagtgattgatct------aacaatctgtctaatttactcatctcttgtttgtatcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871545|gb|DT020600.1|DT020600
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|71877258|gb|DT026313.1|DT026313
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     TGTTGAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|161720497|gb|FC070609.1|FC070609
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAATTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAATTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|71881490|gb|DT030545.1|DT030545
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|349826323|gb|FQ416128.1|FQ416128
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|27582659|gb|CB005354.1|CB005354
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|351054502|gb|FQ451978.1|FQ451978
EST:     TGTTTAAGAAGATCAGCAGTGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|77587524|gb|DV222927.1|DV222927
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG                         GAAGAATTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT
genomic: TGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagat ... catattacagGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag

- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AGATCA