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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccattaaagcattgtactgaagattgtaatttttttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 3'ss of exon 1
--------------------------------tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccatt----------aaagcatt--gtactgaagattgtaatttttttctttcca-atacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
                                 || |       | ||   || ||||   ||   |  |   |  |  ||  || ||             ||||   | | ||  | | ||  | |  |  |||     | |||||||||| || ||  | |||||  | || |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||
gtacgtcctctctctctctctcgcttgctcgtgcagtgtacttgagtgtcgattgtttcacttgaactgaaattaattgtgttccctttttgtttcgcggcgcatgtggcattgggggtggtggtctgctcgtttgtgcgtgcagTTAGTGTGAGCGAGGTTGAGGCGTTGTATGAGCTGTTCAAGAAGATCAGCAGCGCGGTGATCGATGACGGACTGATCAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 3'ss of exon 2
----------------------tcattcctacctaatgctaatagtttgcttt-ctgccaa--ctcttttaatgaacca-ttaaagcattgtac-tga--agattgtaatttttttctttcca--atacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
                      |  ||    |    | ||  |  ||   |||  |||  |  || | | | ||    | ||  |    |||   ||    | ||| | ||| |  | ||      | |||| || || || ||  ||||||| || |||||||| || |||||||| ||||| ||||||||||||||||| ||||| ||||||
gtaagtccgccgcattcgccattggttggggcgccgtactcctccttccttttgttgctgagcctgtctcattgggggaatttgactggtgtgtgtggttgggttggattttgtggccttgtgttgtgcagTCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCTTCAAGAAGATAAGCAGTGCTGTGATTGATGACGGGCTGATTAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G173424_T01 (Zea mays), 3'ss of exon 2
------tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaacc-attaaagcattgtactgaagattgtaattttt--ttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
       ||  ||   ||  |       | ||  | |    |         |||||| | | |  |    ||  |        ||    | |  || || |   | |||| || || |||||  ||||||| || |||||||||||||||| |||||||||||| || |||||||| || ||||| ||||||
gtaagcccaacccgctctcctctctgctgcttcatcttgcacgcacgggcgaatgaatcgaattgacttctgcgcctggttgggttgcctgtgcttgttgctcctgcagTCAGCGTGAGTGAGGTCGAGGCGCTGTACGAGCTGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G173424_T02 (Zea mays), 3'ss of exon 2
------tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaacc-attaaagcattgtactgaagattgtaattttt--ttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG-----------------
       ||  ||   ||  |       | ||  | |    |         |||||| | | |  |    ||  |        ||    | |  || || |   | |||| || || |||||  ||||||| || |||||||||||||||| |||||||||||| || |||||||| || ||||| ||||||                 
gtaagcccaacccgctctcctctctgctgcttcatcttgcacgcacgggcgaatgaatcgaattgacttctgcgcctggttgggttgcctgtgcttgttgctcctgcagTCAGCGTGAGTGAGGTCGAGGCGCTGTACGAGCTGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAGGTCGGCAATGGGTGTCT

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G112672_T02 (Zea mays), 3'ss of exon 1
-------------------tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccattaaagcattgtactgaagattgtaatttttttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
                    | || |       | ||   | | | | | |     ||  |  |       | |       |  |||||     | |   | |     ||    | ||||||| || || ||  |||||||| | || || ||||| |||||||||||||| |||||||||||||| || ||||||||||||
gtacgtccaagccgcttccccgtttccgttgtctccttcaattcttcgtccgtagtaccgtgatcgattgtcttccgtttgtcttactgcctcgtctgcgtctaaaactttacctgcagTTAGCGTGAGCGAGGTCGAGGCATTGTATGAACTGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G007555_T01 (Zea mays), 3'ss of exon 2
--------------------------------tcattcctacctaatgctaatagtttgctttctgccaactcttttaa--tgaaccattaaagcattgtactgaagattgtaatttttttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
                                |  ||| |  |  | ||     |  ||  ||      || | |      ||  |  |    |      | ||    |||    |  ||  | | |  | |||| || || || ||  ||||||| || ||||||||||| |||||||| ||||| ||||| || ||||| || ||||| ||||||
gtaagcatgatctgcttcctctccctggtcgctgcttcatttcgcacgcacggggaatgaattgaattgacgcctgcgccttgttcggtctgggtggctgagtgggctttgcctgtgcttgttgttcc-tgcagTCAGCGTGAGCGAGGTCGAGGCTCTGTACGAGCTGTTCAAGAAGATAAGCAGTGCTGTCATCGATGATGGGCTGATTAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 2
tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccattaaagcattgtactgaagattgtaattttttt--ctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
   ||  |       | | ||  |     |  | |      |   ||  ||  ||  ||   |||| || ||||| |  |||| |||  |||    || |||| |||||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| || ||  |||| ||||||
--gtttgttttgctggattatgttgcctctaatacggttgttaggaaataaatatgtaatatttgtgctaaagatagctatttattttgcttgtatatgcagTCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------------------------------tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccattaaagcattgtactgaagattgtaattttt--ttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
                                                                   | ||||  |     ||| | || | |  ||  |||   |||| |||| ||   ||  ||   ||    |     || | ||  ||   || ||    | ||||||| || |||||||| ||||| || || |||||||||||||| |||||||| |||||||||||||| || || || ||||||
gtatgctctcaacttcttttccatcttattttaacttccatgcactttttttttccagttatatgtatgattcaaaggct-tgccattactctagttgatgct--ctctgttaa-gaggaatgcaaatctttctttctgtgttttgatcattgactcgtttgggtgcagTTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAACAAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------tcattcctacctaatgctaatagtttgctttc-tgccaactcttttaatgaaccattaaagcattgtactgaagatt----gtaatt---tttttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
                            |  ||  |   |  | |   |  |  | ||   ||| |   | ||| | |||     |||   || | ||||||| |     | |||   |||   |||  ||| |||||||||| |||||||| || || || || ||||| |||||||| |||||||| || ||||||||||| || || || ||||||
gtatgccctatcaccttctctactctttttttttttttttttttccggttataagattcgatgcaataccatttgaggaatgcaaaaatatttcttctgaagactattgatgattgaatttggttttggaatgcagTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGCAGTGCCGTGATTGATGATGGGCTAATAAACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871545|gb|DT020600.1|DT020600
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATGGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|71877258|gb|DT026313.1|DT026313
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATATGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATGGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATATGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     GCAAGA-GTCTTCAAGATCCTGAAGTTCTTGCAAGGGAATCAGTGT                         TTAGTGTAAGTGAAATCGAGCCACTATACGAGCTGTTGAAGAAGATCAGCA
genomic: GCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|161720497|gb|FC070609.1|FC070609
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCTAGGGAAACAGTGT                         TTAGTGTAAGTGAAATAGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCTAGGGAAACAGTGT                         TTAGTGTAAGTGAAATAGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|71881490|gb|DT030545.1|DT030545
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|349826323|gb|FQ416128.1|FQ416128
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     AAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: AAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     TTAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|351054502|gb|FQ451978.1|FQ451978
EST:     TTAAGCAAGAGGTCTTCGAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|77587524|gb|DV222927.1|DV222927
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGT                         TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCTAGGGAAACAGTGT                         TTAGTGTAAGTGAAATAGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA
genomic: TCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTgtatggctct ... tccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaaccattaaagcattgtactgaagattgtaatttttttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG
 ttttaat  putative branch site (score: 3)
                                taatttttttctttcc  putative PPT
                         aagattgtaatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccattaaagcattgtactgaagattgtaatttttttctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
tcattcc
- - - - - ctaatgc
- - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - ccaactc
- - - - - - - - - - - - - - - - - - - - - - -aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagca