Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacttgaattttatttttagttattggttaattatgtgacttgtagtttctccactacctccatatggcaatgacaaactcatctatgtcatcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 5
------------------------------------------------tgacttgaattttatttttagttattggttaattatgtgacttgtagtttctcc-actacctccatatggcaatga----caaactcatct-atgtcatcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG
                                                |  ||  || |||| |   | |      || |      | |||  | |||||   |  ||||   ||    ||  |      ||| ||| | || ||||  | ||||||| |||||  |||| |||||||||||||||||||| ||||| ||||| |||
gtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcagTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAGAG

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G08230.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------tgacttgaattttatttttagttattggttaattatgtgacttg---tagtttctccactacctc------catatggcaatga--caaactcatct----atgtcatcatg---cagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG-
                                               |    |  ||| ||||||||  | |  |   | |     ||| |    |  |  |  | |  ||       ||| |   ||| |  |||| |   ||    |||  ||||||   ||||||| |||||  |||| |||||||||||||||||||| ||||| || || ||| 
tatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008619|gb|BQ793653.1|BQ793653
EST:     GACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: GACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|71871545|gb|DT020600.1|DT020600
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|71877258|gb|DT026313.1|DT026313
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|22008469|gb|BQ793503.1|BQ793503
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|161720497|gb|FC070609.1|FC070609
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATATGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     TGCTCTATCTGTTTTTCACCCCAACGTACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|34547727|gb|CF515959.1|CF515959
EST:     GTTTTTCACCCCTCCGCACCTATCGACGGCAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: GTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATATGATCTCAAGCAGCAAGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|33410135|gb|CF215762.1|CF215762
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|22008668|gb|BQ793702.1|BQ793702
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|71881490|gb|DT030545.1|DT030545
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCAT
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCAT
EST: gi|349826323|gb|FQ416128.1|FQ416128
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTA--CGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|22008915|gb|BQ793949.1|BQ793949
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|27582659|gb|CB005354.1|CB005354
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|351054502|gb|FQ451978.1|FQ451978
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|77587524|gb|DV222927.1|DV222927
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACTAGATTGAGT                         TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGT                         TTTCTTTTCAGTTATATGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG
genomic: TGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt ... catcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgacttgaattttatttttagttattggttaattatgtgacttgtagtttctccactacctccatatggcaatgacaaactcatctatgtcatcatgcagTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaactc