Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactatttttattgtaaaggaaattgatttaaagtggagcaaatcatacttcagtttttgaattgagtgtgatggtctgggcatattaacttcgtttt...

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 6
TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactatttttattgtaaaggaaattgatttaaagtggagcaaatcatacttcagtt---tttgaattgagtgtgatggtctgggcatattaacttcgtttt
|||| |||||  |||| |||||||||||||||||||| ||||| ||||| ||||||  || |  | ||        | || |||  || |         |  | || ||       ||| ||  || |||   |||    |               
TTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAGAGgtacttagtcatcttt------gatttaattctaaattttttgctcctcatttgagacaagcctgatttttgtatgactttctaaatag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008619|gb|BQ793653.1|BQ793653
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|71871545|gb|DT020600.1|DT020600
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|30329256|gb|CD012518.1|CD012518
EST:     AGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: AGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|71877258|gb|DT026313.1|DT026313
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|22008469|gb|BQ793503.1|BQ793503
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GCGAAGCGATTGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|161720497|gb|FC070609.1|FC070609
EST:     CTTTTCAGTTATATGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAGTCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|34416243|gb|CF414997.1|CF414997
EST:     TCAGTTATATGATCTCAAGCAGCAGGTTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCTCNCTTGCTGAGTCTGGTATGAATCTTTCG
genomic: TCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|34547727|gb|CF515959.1|CF515959
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGG-CATCACTTGCTGAATCTGGTATGAATCTTTC
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCA-CACTTGCTGAATCTGGTATGAATCTTTC
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     CTTTTCAGTTATATGATCTCAAGCAGCAAGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAGTCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|33410135|gb|CF215762.1|CF215762
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GCGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|22008668|gb|BQ793702.1|BQ793702
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|349826323|gb|FQ416128.1|FQ416128
EST:     CTTTTCAGTTA--CGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCCCACTTGCTGAATCTGGTATGAATCTTTCC
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|26260125|gb|CA811188.1|CA811188
EST:     TTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: TTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|22008915|gb|BQ793949.1|BQ793949
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|27582659|gb|CB005354.1|CB005354
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|351054502|gb|FQ451978.1|FQ451978
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|77587524|gb|DV222927.1|DV222927
EST:     CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     CTTTTCAGTTATATGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAG                         GTGAAGCAAATGGTAGTGGCCACACTTGCTGAGTCTGGTATGAATCTTTCG
genomic: CTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactattt ... ctatatttagGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGgtaactatttttattgtaaaggaaattgatttaaagtggagcaaatcatacttcagtttttgaattgagtgtgatggtctgggcatattaacttcgtttt

- - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcaaa